KEGG   Lolium perenne (perennial ryegrass): 127292472
Entry
127292472         CDS       T08650                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
lper  Lolium perenne (perennial ryegrass)
Pathway
lper03030  DNA replication
lper03410  Base excision repair
lper03420  Nucleotide excision repair
lper03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lper00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    127292472
   03410 Base excision repair
    127292472
   03420 Nucleotide excision repair
    127292472
   03430 Mismatch repair
    127292472
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lper03032]
    127292472
   03036 Chromosome and associated proteins [BR:lper03036]
    127292472
   03400 DNA repair and recombination proteins [BR:lper03400]
    127292472
DNA replication proteins [BR:lper03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    127292472
  DNA Replication Termination Factors
   ELG1-RFC complex
    127292472
Chromosome and associated proteins [BR:lper03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    127292472
DNA repair and recombination proteins [BR:lper03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     127292472
  Check point factors
   HRAD17(Rad24)-RFC complex
    127292472
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA RuvB_N Rad17 DUF815 Sigma54_activ_2 Mg_chelatase AAA_22 AAA_5 AAA_11 AAA_16 nSTAND3 ABC_tran AAA_2 NPHP3_N AAA_29 AAA_24 FtsK_SpoIIIE DUF5906 ATPase_2 RNA_helicase TsaE
Other DBs
NCBI-GeneID: 127292472
NCBI-ProteinID: XP_051177836
LinkDB
Position
4:complement(50010482..50015222)
AA seq 354 aa
MLWVDKHRPKTLDKVIVHEQVAQNLKKFVAEQDCPHLLFYGPPGSGKKTLIMALIKQMFG
AGAEKVKMENKTWKIDTGTRTFDLELAMLSSSHHVEMNPSDAGFQDRYVVQEVIKEMAKS
RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR
CLNVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQY
PFSPNQVPPPLDWEQYVSEIATDILSEQSPKRLYSVRQKFYELLVNCIPPESILKKLLTE
LMKKLDADLKHEVCRWAAHYEHKMRLGSKAIFHLEAFVAKFMSIYKEFLVATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgctgtgggtggacaagcaccggccgaaaaccctagacaaggtcatcgtccatgagcag
gtcgcgcagaacctcaagaagttcgtggcggagcaggactgcccgcacctgctcttctac
gggccgccggggtccggcaagaaaaccctaatcatggcgctcatcaagcagatgttcggc
gccggtgccgagaaggtgaagatggagaacaagacctggaagatagatactgggacgagg
acatttgatctggagctggcgatgctgtcaagctcccaccacgtggaaatgaaccccagc
gatgcggggtttcaggacagatatgttgttcaggaggtcattaaagagatggcgaagagc
aggccaattgatgcaaagggcaagagagcattcaaagtgcttgtcctgaatgaagttgat
aagctctcacgagaagcacagcattctctccgtaggacaatggagaagtacagtgcatct
tgtaggctgatattatgctgtaatagctcctcaaaggtgacagaagctgtaagatcccgt
tgcctgaatgtgcgagtgaatgcacctagcgaagatcagattgtacaagttctggagttc
attgggaagaaagaaaacctgcaacttccatttggatttgctgctcggatagcagctcag
tcaaaccgcaacttgaggcgagcaatattatttttcgagacatgcaaagtccaacaatat
ccgttttcaccgaatcaagtgccacctcctcttgactgggagcagtatgtgtctgaaatt
gcgactgatatcttgagtgaacaaagccctaaaaggctatactctgtgcgccagaaattc
tacgagttacttgtcaattgtatcccacctgaaagcattttgaagaagttgttgactgag
ttaatgaagaagttagatgcagatctgaaacatgaagtttgtcgctgggctgcgcactat
gaacacaagatgcgcctagggtccaaggccatttttcatctggaagctttcgttgccaag
ttcatgagcatttacaaggagttcttggtcgccacatttggttga

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