Lolium perenne (perennial ryegrass): 127293156
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Entry
127293156 CDS
T08650
Name
(RefSeq) vacuolar sorting protein 39
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
127293156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lper04131
]
127293156
Membrane trafficking [BR:
lper04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
127293156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
AlaDh_PNT_N
Motif
Other DBs
NCBI-GeneID:
127293156
NCBI-ProteinID:
XP_051178683
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All DBs
Position
4:83681529..83691486
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AA seq
984 aa
AA seq
DB search
MVHSAYDAVELVSGVPGRIEAVASHAGKLLVAASDCSLRIYSPPVPADGEIRRDGPYALE
RQEQRLWRRAPSAMEASATRDLLLSLSDWVALHRLPGLETVAVVSKTKGANVFAWDDRRG
LLAAGRQKRLTIFRLDGGREFVEVKEFGVPDMVKSMAWCGDNICIGIRRDYMIINSVTGA
LTEVFSAGRIAPPLVVPLPTGELLLGKDNIGVFVDQNGKLIQDGRIIWSDTPASVVIHKP
YAVARLPRHVEIRSLRAPSALVQTVVLRDVQKLVQTDNCILAALSNSVYGLLPVPIGAQI
VQLTASGEFEDALALCKLLPPEDSNLRAAKESSIHMRYGHFLFDNGSYEEAMEQFSDSHV
DITYVFSLYPSLVLPQTHIIGEHDKLHDLPELARESSDVTDEMESYSLQLHDSDDKSPLE
NKKMSHNSLIALVKYLQKKRNGIIDRATSEVTEEVVSGAVHHSLILSEPYKAKKPNKKRP
QTLRSSVARELATVLDTSLLQALILTRQSSGAVELLKGLNYCDLKICEEFLKERSDYMVL
IELYRSNDMHREALQLLNQLVEKSKSEMANTDSIKKINPQMIIEYLRPLCRSDPMLVLES
SLYVLERNPSDTIELFLSENVPADLVNSYLKQHAPNLQSTYLELMLSMSETGINPNLQNE
LVQLYLSEVLDWYKILKDEGNWTDKTYSPTRNKLISTLESNSGYNTDTLLKRLPQDALFE
ERAIMYGKMNQHLRALSLYVHKLHMPERAVAYCDRVYEEGAQQPSKSNIYFNLLQIYLNP
RKAEKEIEQKIIPVASQYPGIQRVSSTTKVRGGRMGRKVVEIEGAEDIRFSTSGTDNGRS
DGDTDDVSDGGPIMLNEALELLSQRWDRINGAQALRLLPRDTKLQDLVSFLEPLLRNSSE
HRRNYMVIKNLILRANLEVKEDLYKRRQAVVKIDGDSMCSLCHKRIANSAFAIYPNGQTL
VHFVCFRESQQIKAVRGSNSGKRR
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggtgcacagcgcgtacgacgccgtggagctggtctccggcgtgccgggccgcatcgag
gccgtcgcctcgcacgccgggaagctcctcgtcgcggcctccgactgctccctccgcatc
tactccccgccggtccccgccgacggcgagatccggagggacgggccctacgcgctcgag
cgccaggagcagcgcctctggcgccgcgcgccctccgccatggaggccagcgccacccgc
gacctcctgctctcgctctccgactgggtcgccctccaccgcctcccggggctcgagacc
gtcgccgtcgtctccaagaccaagggcgccaacgtcttcgcctgggatgaccgccggggc
ctgcttgccgccggccgccagaagcgcctcaccatcttccgcctcgacggtgggcgagaa
tttgtcgaggtgaaggaatttggtgttcctgatatggtgaaatcaatggcctggtgtggt
gacaacatatgtattgggattaggagggactatatgatcataaatagcgtgaccggagca
ttaactgaagtgttttctgctgggaggattgctcctccattagttgtgcctcttcctacc
ggtgagctcctccttggaaaggataacattggagtatttgttgatcaaaacgggaaactt
attcaagatggccggataatttggtcagatactcctgcttctgttgttatacataagccg
tatgccgtggcacgtctgccacgacatgttgagatacggtctcttagagctcccagtgca
ttggttcagacggtggtcctccgtgatgttcagaagcttgttcaaactgacaactgtata
cttgctgcgctttccaactcggtctatggtttgctgcctgttcctattggtgcccagata
gtgcaattgactgcctctggagaatttgaagacgcgctggcattgtgtaagttacttcct
ccagaggattcaaacctacgagctgcaaaggaaagctcaatacacatgagatatgggcac
ttcttatttgataatgggagctatgaggaagcaatggaacaattttcggattcacatgtg
gatattacatatgtgttttctctatacccatctcttgttctgcctcaaacacacattata
ggtgaacatgacaagctccacgacctgccagaattagcaagagaatcatctgatgtgaca
gatgaaatggaatcatactctttgcaacttcatgactctgatgataaatctccactggag
aacaagaaaatgagtcataattctctaatagcccttgtgaagtacttacagaagaaaaga
aatgggattattgatagagcgacgtctgaagtaacagaggaggtggtctctggagctgtg
caccatagcttaatcttatctgagccatataaggcaaagaagccaaataagaaacgaccc
cagacgcttagaagttctgttgctagagaattggcgactgtactggacacatctcttctt
caagctcttattcttacaagacagtcatcaggagctgttgaattattgaaaggactcaac
tattgtgatttgaagatatgcgaggagtttctgaaggaaaggagcgattatatggtgtta
attgagctctataggagcaatgacatgcaccgtgaagctctccaattactcaatcagttg
gttgaaaaatcgaagtctgagatggcaaatactgattctattaaaaaaattaacccgcaa
atgatcattgaatatctcaggcccctttgtagatctgacccaatgctggttttggagtct
tctttgtatgttcttgaacgcaacccgtcagacactattgagctctttttgtctgaaaac
gttccagcagatttggtaaattcatatctgaaacagcatgctccaaatttgcagtcaact
tacttagagctaatgctctcaatgagtgaaacggggatcaaccctaatctacaaaatgag
ttggtgcaactctacctttctgaagttcttgactggtacaagattctgaaggatgaggga
aattggactgataaaacgtattccccaacgcggaacaagttgatatctacattagagagt
aattcaggttacaatacagacacacttcttaaacgtcttccccaggatgctcttttcgaa
gagcgtgctataatgtacgggaaaatgaatcaacatctccgtgcattatctctgtatgtt
cataagctccacatgccagagcgcgcagttgcatactgtgatcgtgtttacgaggaagga
gcgcagcagccttccaagtccaatatttattttaatcttctccaaatttatctaaaccca
agaaaagctgaaaaagaaattgagcagaaaattattccagtggcatcacagtaccctgga
attcagagggttagctctactactaaggtcagaggagggcgtatgggtagaaaggttgtt
gagatcgaaggggctgaagacatacgctttagtactagtggaacagataatggccgaagt
gatggcgacacggatgatgttagtgatggaggccctataatgttgaatgaagcacttgaa
ttgttaagccaaaggtgggacagaataaatggtgctcaggctcttcggttgttacccaga
gacacaaaactgcaggatctggtgtcatttcttgaaccactacttcggaactctagtgaa
catcggcgcaattatatggttatcaaaaacttgattctccgagcaaacttagaggtaaag
gaggatctgtacaagcgacgtcaagctgttgtgaagattgatggagatagcatgtgttct
ctttgtcataaacgcattgcaaacagtgcttttgcaatttatccaaatggacagacattg
gtgcattttgtatgctttagagaatcacaacagattaaggctgttagaggatcaaactct
gggaaacgtagatga
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