Lolium perenne (perennial ryegrass): 127293625
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Entry
127293625 CDS
T08650
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127293625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127293625
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127293625
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127293625
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Peptidase_M9_N
DUF5646
Motif
Other DBs
NCBI-GeneID:
127293625
NCBI-ProteinID:
XP_051179225
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Position
4:complement(108967847..108977484)
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AA seq
862 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPREKAKSETRDWLNSVVSDLENQIDNFEAELEGLSFKKGKQRPPRLVHLEKSITRHKA
HIKKLESILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSDVEDLYSTLPMEKVEA
LEDMVSLAPSILIKGVSAVSTTAVSSTKSPTATSPTQATVPTTSQGTSQDQAEETASLES
NPDSVPQTPPPKGVNLGPSVPVVPTAISTTVAAVSVLADTISSPGPVRPSIPTTVPAIFS
SATVRIAPESMPTVPSAPTNSSSALKDDDGMNFPPRRPSPAITEIGLGRGITRGLTGQAL
GPPPISAGPVPGNGSISALPAINDLSKRNILNTDERVNSGGLSQQLASPLANKVQLQPVL
RTNDAISSDSNNTSESTILGGRVFSPPVVSGVQWRPQAPAGFTNQSESAQFRGRPDVADH
REKYFPRLQQPQPQGNAVNASNASGTNQKQFSTQQPNSLLQQFNSQNSSISSQVGIGMGV
QGPDAGHTKSEEQPGLAEDGSVEAAATTGANKNTNEDDTKTPYSNPSASIAEGTQLSRDS
DLSPGQPLQPGMPSSGVGVIGRRSVSDFGAVGDNLSGTSATAGHDHLYNLQMLEAAYHRL
PQPKDSERARNYTPKHPSPTPASFPQVQAPIVTNPAFWERLGTDTLSTDMLFFAFYYQQN
SYQQYLAAKELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSYVYFDFHLADDGNGWVQ
RIKNDFTFEYNYLEDELSVQPN
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccagccggaagctgcagggcgagatcgaccgcgtcctcaagaaggtccaggag
ggcgtcgacgtcttcgacagcatctggaacaaggtctacgacaccgagaatgccaaccag
aaggagaagttcgaggccgacctcaagaaggagatcaagaagctgcagcgctaccgggac
cagatcaagacctggatccagtcaagcgagatcaaggacaagaaggttagtgcctcttat
gagcaggctcttatggatgcccgcaagcagattgaacgcgaaatggaacggtttaaggtc
tgtgagaaagaaactaaaaccaaggccttctcgaaggaaggattaggtcaacaaccgaaa
actgatcctagagagaaggctaaatctgaaactagagattggcttaacagtgtggttagt
gatttggaaaatcagattgataattttgaagcagagcttgaaggactttcatttaagaaa
ggaaagcaaagacctcctcgattggtacatctagagaaatctattacgcggcataaggct
catataaagaaattggagtcaatcttgagactcttggataatgatgagttgagtcctgaa
caagtcaatgatgtgaaagatttcctggaagactatgttgagcgtaaccaggaagatttt
gatgaatttagtgatgttgaggatctttatagcacattacctatggagaaggttgaagca
cttgaagacatggtttcacttgctccttccattcttattaagggtgtttctgctgtttct
acgactgcagtttcgagtacaaagagtccgacagcaacttcacctactcaggctactgtc
ccaacaacctcacaaggtacatcacaagatcaagcagaggaaacagcttcactagaaagt
aatcctgattcagtgccacaaacaccacctccaaaaggtgtaaatctgggaccttcagtg
ccggttgtgccgactgccattagtaccactgttgcagctgtttcagttttggcagatacc
attagttcaccaggcccagtacggccatctattcctactacagtacccgcaatattttct
tctgctactgttcgaattgctccagagagcatgcccactgttccttctgctcctacaaac
tcatctagtgccttgaaggatgatgatggcatgaactttcctccacgcagaccatctcct
gcaattactgaaattggtcttggcaggggtattactcgtgggttaactggtcaagcacta
ggccctcctcccataagtgcaggtccagttccaggaaatggatcgatcagtgcacttcct
gcaataaatgacttgtccaaaagaaacatattgaatactgatgagagagttaacagcggt
ggtctttctcagcagttagcttcacctcttgctaacaaggttcaactgcaaccagtcctg
aggaccaatgatgcaattagctctgattctaataacacaagtgaaagtaccattcttgga
ggaagagtcttttccccaccagttgtttctggtgttcagtggaggcctcaagctcctgct
ggttttacaaatcaaagtgaatctgctcaatttcgtggaagacctgacgttgctgaccat
agggagaaatattttccaagattgcagcaaccacagccgcaaggcaatgccgttaatgct
tctaatgcatcaggcacaaatcagaagcagttttccacccagcagccaaattccctctta
caacagtttaattctcagaattcctcaatatcctctcaagtgggcattgggatgggggtt
cagggcccagatgctgggcatacaaaaagtgaagaacaaccaggtttggctgaagatggt
agcgtagaggctgctgcaacaactggagcgaataaaaataccaatgaagatgacacaaag
actccatattcgaatccctcagcatctatagcagaaggtacccagttatctagagactct
gatctatcacctgggcagcctttgcaacctggcatgccatcatctggtgtcggtgttatt
ggccggaggagtgtatctgatttcggtgcagtcggagacaatcttagtgggacttctgca
actgctggtcatgatcacctttataatttgcaaatgctcgaagctgcataccacaggctt
ccacaacctaaggactccgagcgtgcaagaaattatactccgaagcatccttcaccgacc
ccagctagtttcccacaagttcaggcaccaattgtgacaaaccctgcattttgggaaaga
cttggtactgatacattatctacagacatgttattctttgccttctactaccaacagaat
tcataccaacaatatctggctgcgaaagaactaaaaaaacagtcatggagatttcatagg
aagtacaatacttggttccaacggcatgtggagccacaagttacaacagatgagtatgaa
cggggatcttatgtgtactttgatttccatctggcggatgatggcaacggatgggtccaa
agaatcaagaatgacttcacgtttgaatacaactaccttgaggatgaactgtcagtacaa
ccaaactag
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