Lolium perenne (perennial ryegrass): 127293899
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Entry
127293899 CDS
T08650
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127293899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lper03041
]
127293899
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127293899
Spliceosome [BR:
lper03041
]
Complex C
Other components
Step II factors
127293899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
AAA_22
HA2_C
DEAD
AAA_19
AAA_30
ABC_tran
ATPase_2
AAA_16
SLFN-g3_helicase
Helicase_RecD
NPHP3_N
T2SSE
Dynamin_N
SRP54
nSTAND3
Flavi_DEAD
AAA_33
FtsK_SpoIIIE
AAA_29
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
127293899
NCBI-ProteinID:
XP_051179566
LinkDB
All DBs
Position
4:complement(130285837..130299063)
Genome browser
AA seq
706 aa
AA seq
DB search
MPSPSRPPTPPVLPISEHEDEIVAAVEANPVIVVIGETGSGKSTQLSQILHRRGYTRRGA
IAVTQPRRVAAVSVSRRVAQELGVPLGEEVGYAIRFEDRTSEKTSIKYLTDGVLLRESLS
NPELKQYSVIILDEAHERSLNTDILLGLMKRLIKHRASDLKVLITSATLDGLKVSNFFSG
CPVLNIPGTIFPVEKFYSTDRPTNYVESSLRTAIDIHVKEAPGDVLIFMTGKDDIDKMVS
KLEERIQNLEEGSCIDALVLPLHGSLPPEQQVRVFAPAPPDCRRFIVATNVAETSLTVDG
VVFVIDCGYVKQRQYNPSTGMYSLDVVQISRVQADQRAGRAGRTRPGKCYRLYPSAIYQN
EFLEATIPEIQRTSLAGSVLYLKSLNLPDIDILKFDFLDPPSRESLEDALRQLYLIDAID
ESGQITDVGRLMSELPLDPSLSRTLIEANELGCLSQALTVAAVLSAEITLRQTRSKDMEG
KRKRQELPNGSGLGDHVQLLQIFESWDQAGYDPRWCSDHDLQVRGMKFSKDVRNQLSQII
QKVAKGPTDLQARRGCKSDPDYRKLRRALCVGYGNQLAERMIHHNGYHTVGYRTQLVQVH
PSSVLVEDEYGKLPVYVVYHELINTTRPFMRNVCGVEQDWVKPILKKLEKLNINKLSGGS
SALMDSELLNDKQPGSPTKATGPKQSDVDSKIQAARERYLARKGKK
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgccgtcgcggccgccgacgccgccggtgctgccgatatcggagcacgaggac
gagatcgtggcggcagtggaggcgaacccggtgatcgtggtgatcggcgagaccggctcc
ggtaagagcacccagctctcccagatcctccaccgtcgaggctacacccgccgcggcgca
atcgcggtcacccagccgcgacgtgtcgcggccgtatccgtctccaggagggtggcacaa
gagctcggtgtcccacttggggaagaagttggctatgcgattagatttgaagaccgaact
tcagaaaagacctcgataaagtacctgacagatggtgttcttctgcgggagagcctttca
aatcctgagttgaagcaatactcagtaattatcttggatgaagctcatgagcgtagcttg
aacactgatatcctcttaggtttaatgaaaagattgatcaaacatcgagcttcagatttg
aaagttctcatcacttcggcgacacttgatggtttgaaagtgtcgaatttcttctcagga
tgtcctgtgttgaacatccctggaaccatattccctgtggagaagttttacagcacagat
cgtccaacaaattatgtagaatcttctctcagaacagctatagatatccatgttaaggaa
gctccaggggatgtattaatatttatgacaggaaaggatgacattgataagatggtctca
aaattggaagaaagaattcaaaatcttgaggaaggttcttgtatagatgctcttgtcctc
ccactccatggttctttgccacctgaacagcaggtccgagtatttgctccagcacctcca
gattgtcgacgattcattgttgcgacaaatgtagctgaaacttcgttgactgtggatgga
gttgtgttcgtgatagattgtggttatgtaaagcaacgccagtataatccgtcaactgga
atgtattcacttgatgtagttcagattagcagggtgcaggctgaccagcgagctgggcga
gctggaagaactcggcctggcaagtgttataggttatacccaagtgccatctaccaaaat
gagtttcttgaggctacaattccagaaattcaacgaacttcccttgctggaagtgttctg
tatctgaaatcattaaatctccctgatatcgacatcctgaagtttgatttccttgaccca
ccatcacgtgaatcattggaagatgctttgaggcagttatacctcattgatgcaattgat
gaaagtgggcaaataacagatgttggacgcctcatgtcagagctccctcttgacccttca
ctttcaaggacattgattgaagcaaatgaactgggatgtctgtctcaggcattaactgtt
gctgcagttttgtcagctgaaatcacgctgcggcaaactagaagcaaggacatggaggga
aagagaaaacggcaagagcttcctaatggttctggcttgggtgatcatgtgcaattgctt
caaatatttgaaagctgggatcaagcaggctatgatccaagatggtgctcagatcatgat
ttgcaggtgcggggcatgaaattcagcaaagatgtgaggaatcaattaagtcagattatt
caaaaagttgcaaaaggtccaacagatttgcaagcaaggagaggatgcaagagtgaccct
gactacagaaagttgaggagagctctttgtgtaggttatggcaaccagttagctgagagg
atgatccatcataatggttaccatacggttggatacaggacacaacttgtgcaggtgcat
ccatcttccgtactggtagaagatgaatatgggaaattacctgtgtatgttgtgtaccat
gaacttatcaatactacgcgacctttcatgagaaatgtttgtggggtcgagcaggattgg
gttaaaccaatcttaaagaagcttgagaaattgaacataaacaaattaagtggcggttcg
agtgcattgatggattctgaacttctaaatgacaagcaaccaggctcgccgacaaaagct
acgggtcctaagcagtctgatgtggacagcaagatccaggcggccagagagcgctacctc
gcacgaaaaggcaagaagtga
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