Lolium perenne (perennial ryegrass): 127294675
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Entry
127294675 CDS
T08650
Name
(RefSeq) THO complex subunit 4A
KO
K12881
THO complex subunit 4
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03013
Nucleocytoplasmic transport
lper03015
mRNA surveillance pathway
lper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127294675
09122 Translation
03013 Nucleocytoplasmic transport
127294675
03015 mRNA surveillance pathway
127294675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127294675
03041 Spliceosome [BR:
lper03041
]
127294675
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127294675
TREX complex
127294675
Spliceosome [BR:
lper03041
]
Complex C
Other components
EJC/TREX
127294675
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127294675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
RRM_10
RRM_fung
Motif
Other DBs
NCBI-GeneID:
127294675
NCBI-ProteinID:
XP_051180498
LinkDB
All DBs
Position
4:172419997..172422074
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AA seq
263 aa
AA seq
DB search
MADALDMSLDDIITKNKPSHSRGRGRRNPFSASGGPAPARRRFHRRAANRSAAAPYHQLN
FQPQQVPPAFGYVAQPMAMVTAPSTGLDTAPTKLYISNLDSNVSNEDIKDLFSEMGEIKR
YSINYDKSGRSKGTAEVVFSTKAEALAALKKYNNVHLDGKPMKIEVIGTNIEAPAPAIFA
FAPPPLPGNFNFPPKSGPGRGAGGRGWSRGGGGFSGRGRGRDGGRGRGASRGRGRGGRGN
VEVSAADLDADLDKYHSAAMQTS
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccctggacatgtcgctggacgacatcatcaccaagaacaagccctcgcac
agccgcggccgcggccgccgcaacccgttctccgcctcgggaggacccgcgcccgcgcgc
cgccgcttccaccgccgcgccgccaaccgctccgccgccgcaccctaccaccagctcaac
ttccagccgcagcaggtgccgccggctttcgggtacgttgcccagccgatggccatggtg
acggcgccttccactggcttggacaccgcgcccaccaagctctacatctccaacctcgac
tccaacgtctccaacgaggacatcaaggatctgttttccgagatgggcgagatcaagcgg
tactccattaactacgacaaaagtggaagatcgaagggaactgcagaggttgtcttctcg
acaaaagcagaagctttagctgctctcaaaaagtacaacaacgtgcaccttgatggcaaa
cctatgaaaatcgaggtcattgggacaaacattgaggcaccagcacctgctattttcgct
ttcgctccacctccactacctggaaacttcaattttcctcccaaaagtggacctgggagg
ggtgctggtggtcgaggatggtctcggggcggaggtgggttcagtggtcgtggccgaggg
cgtgatggtggccgagggcgtggtgctagccgtgggcgagggaggggagggcgtggcaat
gtggaggtttctgctgcagacctcgacgctgacttggacaagtaccactcggctgcgatg
caaaccagctag
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