Lolium perenne (perennial ryegrass): 127294718
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Entry
127294718 CDS
T08650
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127294718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lper03041
]
127294718
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127294718
Spliceosome [BR:
lper03041
]
Complex C
Other components
Step II factors
127294718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
AAA_16
TsaE
Sigma54_activ_2
ABC_tran
Flavi_DEAD
GIPC1_GH2
SLFN-g3_helicase
PhoH
T2SSE
Motif
Other DBs
NCBI-GeneID:
127294718
NCBI-ProteinID:
XP_051180551
LinkDB
All DBs
Position
4:complement(170809540..170814511)
Genome browser
AA seq
1231 aa
AA seq
DB search
MAPAAAPPAGPADDGLRKLEYLSLVSKVCSELETHIGVGDKVLAEFITELGRDAPDVSDF
DAKLKANGADLPDYFVRTLLTIIHAILPPPAHNPSSAASQSGAGSSKYRALTRPDDPDRA
RDLRLELERDAAAAAPAPAPARDRPRDDDRSRDRDHDRRRDDRGHHDRSRDRDHGRGRGD
RDRAHDDRGHDRGDRDSDRGRDRDRDRGRRDRDREGDRDGNWRRDQDRPQERDRDADQAQ
GRSRRYGGEEGEQERGGGRNAGNALTNSSGDPELYQVYRGRVTRVMDTGCFVRLEDVRGG
REGLVHVSQMASRRVANAKEVVKRDQEVFVKVVSVKGDKLSLSLRDVDQDTGKDLLPMQR
GAEDAPRTNPSVGTGGALGSGRRLGLSGIVITEEDEVAPISRRPLKRMSSPERWEAKQLI
ASGVLDVRDYPQFDEDGDGMLYQEEGAEEELEIELNEDEPEFLQGQSRFSIDMSPVKIFK
NPEGSLSRAAALQTALIKERREVREQEQRAMLDSIPKDLNRPWEDPMPDTGERHLAQELR
GVGLSAYDMPEWKKEAYGKALTFGQRSKLSIQEQRQTLPIYKLKKELIQAVHDNQVLVVI
GETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIR
FEDCTGPETVIKYMTDGMLLREILVDENLSQYSVVMLDEAHERTIHTDVLFGLLKQLIKR
RSDMRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQI
HLTEPEGDILVFLTGQEEIDHACQCLYERMKGLGKDVPELIILPVYSALPSEMQSKIFEP
APPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKINVYNSKQGLDSLVITPISQASAKQR
AGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGSTVLNMKAMGINDLLSFDFMD
PPAPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILT
IIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFV
QSRSLRRAQDVRKQLLTIMDRYKLDIVAAGKNFTKIRKAITAGFFFHAARKDPQEGYRTL
VENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKWLVELAPRFYKGADPT
KMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atggcgccagcggcggcgccgccggcgggtcccgccgacgacgggctccggaagctggag
tacctatcgctcgtctccaaggtgtgctcggagctggagacccacatcggcgtcggcgac
aaggtgctggccgagttcatcaccgagctcggccgcgacgcccccgacgtctccgacttc
gacgccaagctcaaggccaacggcgccgacctccccgactacttcgtccgcacgctcctc
accatcatccacgccatcctcccgccgcccgcccacaaccctagctccgccgcctcccag
tccggcgccgggagctcaaagtaccgcgcgctcacccgccccgacgacccagatcgcgcc
agagatctccgcctcgagcttgagcgcgacgccgcggccgccgcccctgcccccgccccc
gctagggaccgcccccgcgacgatgaccgatctcgggaccgcgaccatgaccgcaggcgc
gacgaccgtgggcaccatgaccgcagtcgtgacagagaccatggccgcgggcgtggtgac
cgcgaccgtgcccatgatgaccgcggccatgatcgaggcgaccgagacagtgaccgtggc
cgtgacagggatcgagaccgtggccgccgcgacagagaccgggagggagatcgagatggt
aactggcggagggaccaggaccgcccccaggaaagggacagggacgcagaccaggcccaa
ggaaggagtaggaggtatgggggtgaggagggagagcaggagaggggtggaggaaggaat
gcggggaatgctcttacaaattcgagcggtgacccggagctttaccaggtgtaccggggg
agggtgacccgtgtgatggacactggctgctttgtcaggcttgaggatgtacgtggcggc
cgtgaggggcttgttcacgtatcgcagatggcaagcaggcgggttgccaatgcgaaggag
gtggtgaagcgtgatcaggaggtgttcgtgaaggtcgtttctgtgaagggggataagtta
agtctctcgctgagagatgtcgatcaggatacgggaaaggacctcctgccaatgcagcgt
ggtgcggaggatgcaccgaggacgaacccatctgttggtaccggtggtgctctcgggtct
ggcaggaggttgggcctatcagggattgtgattacggaggaggatgaggttgcacccatc
tcacggcgccccctcaaacggatgagctcaccagagaggtgggaggccaagcagctaatt
gcttcgggtgttctggatgtcagggattacccacagttcgatgaggatggtgatggtatg
ctgtatcaggaggagggggcagaggaggagctggagattgagcttaacgaggacgaacca
gagttcttgcagggacagagcagattctcaattgacatgtcacccgttaagattttcaag
aatccagagggttcattaagtcgagcagcagctctccagactgccctcatcaaggagcgg
cgtgaggttcgagagcaggagcagagagcaatgctggactccatacccaaggatctgaac
aggccatgggaggacccaatgcctgatacaggtgagcgacaccttgcacaggagctgaga
ggtgttgggctatcagcttatgacatgccagaatggaagaaggaagcctatggaaaagct
ttaacttttgggcagaggtcaaagctttcgatccaagagcagaggcagactcttcccata
tacaagctgaagaaagagctgattcaagctgtccatgataatcaagttttggttgttatt
ggagaaactggctccggaaagacaactcaggtgacacaatatttggccgaagcaggttat
accacaagaggtaaaattggttgtactcaacctcgtagggtggctgccatgtctgttgcc
aagagagtggcagaagaattcggttgtcgactcggagaggaagttggttatgccattcgt
tttgaagattgcactgggccagaaactgtgataaaatacatgactgatggaatgcttctg
cgtgaaattttagttgatgagaacctttcccagtattcagtagtcatgcttgatgaagct
catgaaaggaccatccacacagatgtcctctttggtttgctgaagcagcttattaagcgt
agatctgacatgaggcttatcgttacttctgctacccttgatgctgaaaagttttccggg
tatttctttaactgcaacatcttcacaatcccgggaagaacattcccagtggagatactc
tacaccaaacaaccagaaagtgactacttggatgctgcattaattaccgtgctccagatt
cacttgacagagcctgagggtgatatccttgttttcttgaccggacaagaggagattgat
catgcctgtcaatgtctatatgagaggatgaaggggctgggaaaggatgttcctgagctt
ataattttgcctgtgtatagtgctcttcctagtgaaatgcagtcaaagatctttgagcca
gctccaccagggaagaggaaggttgttgttgccaccaatattgctgaagcttctttgacc
attgatggcatattttatgtcatcgaccctggtttcgccaagatcaatgtttataattca
aaacaaggcctcgattcgttggtcatcactccaatctcacaagcatcagcgaagcaaaga
gcagggcgtgctggccgtactggacctggcaaatgttatcgtctatacactgaaagtgct
taccgcaatgaaatgtctcccacgacgattccagaaattcagaggatcaatttgggatct
acagttcttaatatgaaggcaatggggataaatgacttgttatccttcgactttatggac
cccccagcaccccaagcactcatctcagctatggaacagctttacagccttggcgctctt
gatgaggaggggcttcttaccaaattgggtagaaaaatggctgaattcccactggatcca
ccactttcaaagatgctactagctagcgtcgaccttggctgcagtgatgagatactgact
atcatagctatgattcaaacagggaatattttctataggcctagagaaaagcaagctcaa
gctgatcagaaaagggccaaatttttccagcccgagggggatcatcttactcttcttgct
gtatacgaggcttggaaggcaaagaacttttcagggccctggtgctttgagaattttgtt
cagtcaagatcactaaggagggcgcaagatgtgaggaaacagcttctcactattatggat
agatataaattggatattgttgctgctgggaagaactttacgaaaataaggaaagcgatc
acagcgggcttctttttccatgcggccaggaaggatccccaggaaggctacagaaccttg
gtggaaaaccagccagtgtacatccaccccagcagcgcactgttccagaggcagccggac
tgggtcatttaccacgagctcgtgatgacaacgaaggagtacatgagggaggtgacggtg
gtcgacccgaaatggttagtggagttggcgccgaggttctacaagggtgcagacccaacc
aagatgagcaagaggaagcggcaggagaggatcgagcctctgtacgacaggtaccacgag
cccaattcatggcgtctcagcaagcgccgagcttga
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