Lolium perenne (perennial ryegrass): 127295551
Help
Entry
127295551 CDS
T08650
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127295551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lper03041
]
127295551
03009 Ribosome biogenesis [BR:
lper03009
]
127295551
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127295551
Spliceosome [BR:
lper03041
]
Complex A
U2 snRNP components
U2 related factors
127295551
Complex B
127295551
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
127295551
Ribosome biogenesis [BR:
lper03009
]
Eukaryotic type
90S particles
Helicases
127295551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
ResIII
nSTAND3
SRP54
T2SSE
Flavi_DEAD
AAA_30
AAA_7
AAA_29
Motif
Other DBs
NCBI-GeneID:
127295551
NCBI-ProteinID:
XP_051181477
LinkDB
All DBs
Position
4:complement(229679919..229683444)
Genome browser
AA seq
719 aa
AA seq
DB search
MGTERKRKVSLFDVVDQTSVSAKLGRAGINGAAAAANPSINPWNGRPYSARYFEILEKRR
TLPVWQQKDDFLRVLRDNQTLILVGETGSGKTTQIPQFVLEAEGLSTRSMVACTQPRRVA
AMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSNKTVLKYLTDGMLLREAMADPLLERYKVI
VLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSSAPLMKVPGRLH
PVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEVNNMGD
QVGPVKVVPLYSTLPPAMQQKIFDAAPPPLREGGPAGRKIVVSTNIAETSLTIDGIVYVI
DPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFSGDLQEQ
TYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTP
LGEMMSEFPLDPQMSKMLVISPKYNCSNEILSVSAMLSVPNCFLRPREAQKAADEAKARF
GHIDGDHLTLLNVYHAYKQNNEDPTWCYENFVNARAMKSADNVRQQLVRIMTRFNLKMCS
TDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWVIYN
EYVLTTRNFIRTVTDIRGEWLVDIAPQYYDLTNFPSCEAKRVLERLHNKRERERAANRS
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgggcacggagcggaagcgcaaggtcagcctcttcgacgtggtcgaccagacctccgtg
tccgccaagctcggccgcgccggaatcaacggcgccgccgccgccgccaatccctccatc
aacccgtggaacgggcggccctattccgcgcgctactttgagatcctcgagaagcgccgc
acgctccccgtgtggcagcagaaggatgacttcctccgcgtcctccgcgacaaccagacc
ctcatcctcgtcggagaaaccgggagtggcaagaccactcagattccccaattcgtgctc
gaggcggaaggtctgagcacccgctccatggtggcctgcacgcagccgcggagggtcgcg
gcaatgtcggtctcccggcgcgtcgcggaggagatggacgttaccatcggtgaggaggtt
ggttacagcatccggttcgaagattgcagcagcaacaaaaccgttctcaaatatttgaca
gatggtatgcttctgagggaagcaatggcagacccgctcttagagaggtacaaggtgatt
gtgctcgatgaggctcacgagcgcacgttggcaacggacgttctctttggccttctcaag
gaggttctaaagaacaggcctgacttgaagcttgttgttatgagtgctacccttgaggcg
gagaaatttcagggttattttagcagtgcaccattgatgaaggttcccggtaggcttcac
ccggtcgagatcttctatacgcaagagccagaaagggactatctggaagctgctatcagg
actgttgtgcagatacatatgtgtgaacctgctggtgatatccttgtgttccttactggc
gaagaggagattgaggatgcctgccggaaaattaacaaggaagttaataacatgggggat
caggttggcccagttaaagtcgtaccgttgtactctactctaccccctgcaatgcagcag
aagatttttgacgctgctccacctccattgagagagggaggtcctgctggaaggaaaatt
gttgtgtccacaaatattgctgagacatccttgaccatcgatggcatagtgtatgttata
gatccagggttttccaaacagaaggtttacaatccaaggataagggtggagtcccttctg
gtgtccccaatttccaaggcaagtgcgcatcagagagctggtcgtgccggtagaacgcag
cctgggaagtgcttcaggttgtacacagagaagagttttagcggtgatttacaggagcag
acctacccagaaattcttcggtcaaacctggcaaatacagttctgacactgaagaagctt
ggaattgacgatttagtgcattttgacttcatggatcctcctgcaccagaaactctaatg
agggccttagaagttctgaactacttgggagcactcgatgatgaaggcaacctgacacct
ctaggtgaaatgatgagtgagttccccttggacccccagatgtcaaagatgcttgtcatc
agtccaaagtacaactgttcaaatgagatcctctcggtatctgccatgctctcagtaccc
aattgctttctccggcctagggaggcacaaaaggctgctgatgaggcgaaggctcgattt
gggcacattgatggggatcatctgacacttctgaatgtgtaccatgcatacaagcagaac
aatgaggatcctacatggtgttatgagaattttgtcaatgcccgagcgatgaagtctgct
gataatgttagacaacagcttgttcgcatcatgaccagattcaacctcaagatgtgcagt
acagacttcaacagccgcgagtactatgtcaatatcaggaaagcaatgctttcagggtac
tttatgcaggttgctcatcttgagcgaactgggcattacttgactgttaaggataatcag
gttgtccatcttcatccctcgaattgcatggaccacaagccggagtgggtcatctacaat
gaatatgttttgaccacaaggaatttcatccgcacagtcactgatatccgtggagaatgg
ctggttgatatagctccacagtattatgatctgaccaatttcccatcatgtgaggcgaaa
cgtgtccttgagaggctacataacaagcgtgagagggaaagagctgccaacagaagctga
DBGET
integrated database retrieval system
