Lolium perenne (perennial ryegrass): 127296786
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Entry
127296786 CDS
T08650
Name
(RefSeq) protein RRP6-like 1 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127296786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127296786
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
127296786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
FixG_C
Motif
Other DBs
NCBI-GeneID:
127296786
NCBI-ProteinID:
XP_051182963
LinkDB
All DBs
Position
4:complement(361990393..361996377)
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AA seq
723 aa
AA seq
DB search
MDGSKAPSAAEEAGDGSQGGARGDTSKSPAAQDGGSSSGAGSSRVPAAYGSYDKSPGAKP
RVTFHDPTIPRPQDQYKIMVNNHSVPFDHVWLDQTEDGRPIHPLEKLNAEQFIDRNAPES
EPVRPADVEDTPFTLVEDQKGLTALVNKLKDVNEFAVDLEHNQYRSFQGLTCLMQISTRT
EDFIIDTLKLRIIIGPYLTEHFKDPTKRKIMHGADRDIMWLQRDFRLYVCNLFDTGQASR
VLEMERNSLEYLLRHFCGVTANKAYQNADWRLRPLSAEMIKYAREDTHFLFYIYDLMRLR
LQQESTSERDLLLEVQERSNEICSQLYEKEQLTDKSYLHIYGLQDHELNAKQLAVVSALY
EWRDFVAREQDESTGYVLPNKALIEIAKNMPTTAEDLRRIVKSKYPVVDANFNLILEIVW
DATENSNAFEAIAEQLKKVQLGQLDLNNILDTGEVIEMAPRGADNVRISLDSADQYSVAP
SSTANIRVTSNSMDNVRISFDSADQYSVAPSSTANIRVTSNSTDNVRISLDSADQYSVAP
SSTANIRVTSNSTDSFTTDATLTGSMWLHDKKKTIPSSEIKTSRTLSGLSRPFSKEAMSN
NKQETFGALVADPIPVMQTPVMQTPIMQTGYFGGYSNEQAQSDVESSAYYYTQFPEYSSS
GGWSPQELQGIPTSGYHDGCYYGHQPSINQSSTGTGQPAARNNAGGFQDWRKQQSSPHPW
QPK
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggacgggtccaaggccccgagcgcggcggaggaggcgggggacgggtcccaggggggc
gctcgcggggacacgagcaagtcgcccgctgcccaggacggcggctccagctccggcgcc
gggtcctcgagggtgcccgccgcctacggctcctacgacaagtcgccgggggccaagccc
agggtcaccttccacgatcccaccatcccgcgcccgcaggatcagtacaagatcatggtc
aacaaccacagcgtgcccttcgatcatgtctggctagaccaaaccgaggacggcaggcct
atccaccccttggaaaaactaaatgcggaacagtttattgacagaaatgctcctgaaagt
gaaccagtaaggccagctgatgtagaggataccccgtttacgctagtagaagaccagaaa
ggcttgacagcattagttaacaagttgaaggatgtaaatgaatttgctgtcgatttggag
cataatcagtatagatcatttcagggtttgacctgcttgatgcaaatttcaacaagaaca
gaggacttcattattgatacccttaagctacgcataataatcggtccctacttgacagaa
cattttaaagatccaaccaagagaaagataatgcacggggcagatcgtgatataatgtgg
ctccaacgggacttccgactatatgtgtgcaatctttttgacacaggacaggcttcaagg
gtcttagagatggagcgaaacagcctagaatacctattgcgtcacttttgtggagtcaca
gcaaataaagcatatcaaaatgcagattggaggttaaggccactctctgctgaaatgatc
aagtatgctagagaagatacacactttctgttctatatatatgacttgatgagacttaga
ctacaacaggagtctacatctgaacgggatcttcttctagaggttcaagagcgcagtaat
gaaatttgctcacagttgtatgaaaaggagcagctgacagataaatcttatctccacata
tacgggttgcaggatcatgaattgaatgcaaagcagctggctgttgtttctgctctatat
gaatggagagatttcgtagctcgtgaacaagatgagagcactggttatgtattgccaaac
aaggctttgattgagatagcaaagaatatgcctacaactgctgaagatttgcgaagaatc
gtgaaatcaaaatatccagttgttgatgctaatttcaatctaattttggaaatcgtatgg
gatgcaactgaaaattctaatgcctttgaagcaatagctgagcaattaaagaaggtccag
cttgggcagttagacttgaataatatactggacactggtgaagttattgaaatggctcct
aggggtgctgataatgttaggatcagtcttgattcagctgatcaatattccgtagctcct
tcatcgactgcaaatatcagagttacttctaacagtatggataatgttaggatcagtttt
gattcagctgatcaatattctgtagctccttcatcgactgcaaatatcagagttacttct
aacagtacggataatgttaggatcagtctcgattcagctgatcaatattctgtagctcct
tcatcaactgcaaatatcagagttacttctaacagtacggatagttttactactgatgct
actttgactggtagcatgtggctacacgacaagaagaaaaccataccatcatctgaaatt
aagacctccaggaccctatcaggcctgagtagaccatttagtaaggaagcgatgagcaat
aataagcaagagacttttggagctctggtagccgatccaatacctgtcatgcagacacct
gtcatgcagacacctatcatgcagacaggttactttggaggatattcaaatgagcaggct
caaagcgatgttgagtcttcagcttattactacacccagtttccagaatatagcagttct
ggtgggtggagccctcaggagcttcagggcataccgacctctgggtatcatgatggttgt
tattacggccatcaaccatcgataaaccaaagcagtacaggaacaggtcagcctgctgct
agaaataatgcagggggtttccaggactggaggaagcaacagtcttcacctcatccgtgg
caacccaagtga
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