Lolium perenne (perennial ryegrass): 127296795
Help
Entry
127296795 CDS
T08650
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127296795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lper03041
]
127296795
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127296795
Spliceosome [BR:
lper03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127296795
Complex C
U4/U6.U5 tri-SnRNP related factors
127296795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
SRP54
nSTAND3
AAA_16
PWI
Apo-CIII
Flavi_DEAD
ABC_tran
Motif
Other DBs
NCBI-GeneID:
127296795
NCBI-ProteinID:
XP_051182978
LinkDB
All DBs
Position
1:71248889..71258106
Genome browser
AA seq
1047 aa
AA seq
DB search
MASDKQLRDWVSDKLMSVQGYSTSVLVKYVIGLAKECSSTGDLVGKLVEYGFSSTAETRS
FAADIYAKVPRKGRGISDYQKQEREAAKLVQKQSTYKLLADEEEDDVDNHTSTTATASSK
SRKHFRRKAEDQDDGKDDDETVAHNSERSVRRRTEEVDDEDGNDALDEEQEIIRDQQERA
QLEKNMKERDAAHTRKLMERQLSKEEQEELIRRAEAMDKNDTSDLRNYSRQAYLQKRRDK
KIDEIRDEIIDHEYIFQDVKLTEAEENDFRYKKKIYDLVKEHVDNTDDVPEYRMPEAYDM
GEGVNQEKRFSVAMQRYKDPEGKDKMNPFAEQEAWEEHQIGKSKLQFGSKDKKQSGDEYQ
YIFDDDQIDFVKSSVIEGTQFEDDSDQETIDAKDILKRELQDERKTLPIYKFRDELLKAV
DEYQVIVIVGETGSGKTTQIPQYLHEAGYTARGKVACTQPRRVAAMSVAARVSQEMGVKL
GHEVGYSIRFEDCTSEKTMIKYMTDGMLLREFLGEPDLAGYSVVMVDEAHERTLSTDILF
GLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEVHYTKAPEADYID
AAIVTILQIHVTQPPGDILVFLTGQEEIETVDEILKHKTRGLGTKIPELNICPIYANLPT
ELQAKIFETTPEGSRKVVLATNIAETSLTIDGIKYVIDPGFCKIKSYNPRTGMESLLINP
ISKASANQRAGRSGRTGPGKCFRLYTSYNYMHDLEDNTVPEIQRTNLANVVLTLKSLGIH
DLVNFDFMDPPPSEALLKALEQLFALSALNSRGELTKTGRRMAEFPLDPMLSKSIVAAEK
YKCSDEVISIASMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLNVYNSWKETD
FSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEVCSNASDLDAIKKAITSGFFHHSA
RLQKNGSYRTVKNPQTVFVHPSSGLAQLLPRWVIYHELVLTTKEYMRQVTELKPEWLVEI
APHYYQLKDVDDAGSKKLPKGQGRAAL
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgacaagcagctcagggactgggtctccgacaagctcatgtccgtccaagga
tactcgacgagcgtcctcgtcaagtacgtcatcgggctagctaaggaatgctcttctact
ggcgacctcgtggggaagctggtcgagtacgggttctcctcgaccgcggagacccgcagc
ttcgccgccgacatctacgccaaggttccccgcaagggcaggggtatcagtgattaccag
aaacaggaaagggaggcagccaagcttgtgcagaaacagagcacttacaagctgctggcc
gatgaggaggaggatgatgttgacaaccacacttcgaccacggcgactgcgtcctccaag
agtaggaagcattttaggaggaaggccgaagaccaagacgatgggaaggatgatgatgaa
acagtagcccacaattctgagaggagtgtccgaagacgaacagaagaggtggatgatgag
gacggcaatgacgcccttgacgaagagcaagaaattatccgagaccaacaggaaagagct
cagctagagaagaacatgaaagaaagagatgcggcgcacactcgaaagttgatggagcga
cagttatctaaggaagaacaagaggagcttatcagaagagcagaagcaatggacaagaat
gacacttcagatttaagaaattattcgaggcaggcgtacttgcaaaagcgaagggacaaa
aaaattgatgagatccgggacgaaattattgatcatgaatacatttttcaggacgtgaaa
ctgaccgaagcagaagaaaatgacttcagatacaaaaagaagatatatgatctcgtcaag
gagcatgttgacaatacagatgatgttcctgagtatagaatgcctgaagcttatgacatg
ggtgaaggtgtcaatcaagaaaagcggttctctgtagcaatgcagcgatacaaagatcca
gagggcaaagataaaatgaatccttttgctgaacaggaagcatgggaagaacatcaaata
ggaaagtcgaaactgcagtttggatcaaaagataaaaagcagtctggtgatgaatatcag
tatatattcgatgatgatcaaattgattttgttaaatcatcggtcatagaaggaactcag
tttgaagacgattcagaccaagagaccatcgatgcaaaagatattttaaaaagggagctc
caggatgagcggaaaacccttccaatctataaattcagagatgaactgctcaaggctgtt
gatgaatatcaggttattgtcatagtgggagaaaccggctctggtaaaacgacgcaaata
cctcaatatcttcatgaagctggatatacagcaagaggaaaggttgcttgtacgcaacct
cgtcgagtggcagccatgagtgttgcagcaagggtgtctcaagagatgggtgttaaattg
ggacacgaggttggttactccataaggttcgaggattgcacctccgagaaaacaatgatt
aaatacatgaccgatggaatgcttttgagggagtttcttggagaaccagatttggctggc
tatagtgttgtcatggttgatgaagctcatgagcgtacactgtctactgatatcttgttt
ggtttggtgaaggacattgcaaggtttcgtccagatctaaagttgctcatttcaagtgca
accctggacgcggaaaaatttagcgactactttgattcagctccgattttcaagattcct
gggaggcgataccctgttgaagttcattatacaaaagctccagaagcagattacattgat
gctgccattgtcacaatcttacagatacatgtgacacaaccccctggtgatatcctagtg
ttccttacagggcaggaagaaattgaaacagttgatgaaatccttaaacacaaaactagg
ggcttaggcacaaagattcctgaactaaatatatgccctatttatgcaaatctgcctact
gaactacaagcgaagatctttgagacaacccctgagggttctcggaaagtggtcctggcc
actaatatagcagaaacttcattaaccattgatggtataaaatatgttattgacccaggt
ttttgtaagatcaagtcatacaacccccgtacaggcatggaatccctgcttatcaatcct
atctcaaaggcgtcagcaaaccagagggcaggaaggtctggacggacagggccaggaaaa
tgtttccgtctgtacacaagttataactacatgcatgatcttgaggataatactgttcct
gagattcaaagaaccaaccttgcgaatgtggtacttacacttaagagtcttggtattcat
gacttggttaatttcgattttatggacccacccccttcagaggccttgttgaaggccttg
gaacaactttttgctctcagcgcactcaacagtcgtggggagttgaccaagactggaaga
cgaatggcagagtttccattagatcctatgctgtcaaagtcgatagtagctgccgagaaa
tataagtgttctgatgaggtcatctccattgcatctatgttgtcgattggcaattctata
ttctatcgtccgaaggacaaacaagttcatgcagataatgcaaggttgaacttccacact
ggcaatgttggggaccatatagctttactcaatgtctataactcgtggaaagaaacagac
ttctcaactcaatggtgttatgaaaattatatccaggtccgtagcatgaagagggcaaga
gatattcgagatcaactggagggacttctggagagagttgagattgaggtttgttcaaac
gccagtgatttggatgctattaaaaaggctataacatcaggtttcttccaccattctgca
cgtttgcagaagaatggttcatatagaactgttaagaaccctcagactgtctttgtccac
cctagttcaggattagcacagctacttcctcgatgggtaatatatcacgaattagttctc
acgacaaaagagtacatgcgccaggtgacggaactgaagcctgaatggctggtggaaatt
gctccgcattactaccaattaaaagatgtggatgacgctggttccaagaagctacccaag
gggcaaggacgagctgcgttgtag
DBGET
integrated database retrieval system
