Lolium perenne (perennial ryegrass): 127296810
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Entry
127296810 CDS
T08650
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
lper
Lolium perenne (perennial ryegrass)
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127296810
03036 Chromosome and associated proteins [BR:
lper03036
]
127296810
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
127296810
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127296810
Chromosome and associated proteins [BR:
lper03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
127296810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_19
AAA_30
ResIII
UvrD-helicase
Terminase_6N
AAA_22
AAA_16
AAA
SLFN-g3_helicase
UvrD_C_2
Mg_chelatase
Mov-10_helical
LTD
Helicase_RecD
AAA_7
AAA_5
ATPase_2
AAA_24
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
127296810
NCBI-ProteinID:
XP_051182995
LinkDB
All DBs
Position
4:361170695..361175736
Genome browser
AA seq
941 aa
AA seq
DB search
MGYHSDEEFSVAGDKPEVEFIDYQNDNTFQDYQSDDGPVVVTTPFPFENGKPKSVLVGDT
SADTICIENTSSEPVNLWSVRIFSSNPEDSYLLSMMTPPTNDADEEAKKAFLGLTSVEDR
TLQPGQTLTIWLSCMPKEIGLHTSIVHVDIGDEKIERVAFLLADDNVSKALFSDKPYSRG
RGSQGKKFECSTFVPGTRPVRQHTQGFKYKLPQYAIPVEVRELIECKQRPDVLSEELSIR
NYAKFFSTLLVMEEINLEEEMRTYNMEGVSMRRRGNGFLSLEVLGLAEKRPSLISGDYIV
ARHAGSNDRPYQGFIHKVEADEIFLKFDDSFHNAHHDRNKYDASFTYNRLNMRRQYKSVH
EAELIGPDILFPSQSRYRSVKKVPFKPLNPDINTEQADAVGMILGCRGVPPYLIYGPPGT
GKTMTLVEAILQLYTSNRRANVLICAASNSAADHILEKLLSASYLIRPSDIFRLNAPSRQ
YDDVNPDFIRFCFFEDTVFKCPPMRALMRYRIVISTYMYSSTLQAEGIRRGHFTHIFLDE
ASQISEPEAMVPVSAFCGRDTVVVLAGDPMQLGPVVFCKQADKDGLGTSYLQRLLCDFEQ
YHLEDPNYVTKLLRNYRCHPAILELPSQLFYGSELIACKGDEVPSVYDCIGLPNKSFPVL
FVGIQGCDEREGNNPSWFNRIEASKVVNIIRTLTRDGEVREADIGVITPYRQQVVKIKRA
LETFEMPDLRVGSVEQFQGQEREIIIISTVRSTVKHNENDKIFNLGFLTNYRRFNVAITR
AKSLLIIVGNPHIITKDRYWDKLLRYCADNGSYQGCPLPPPEEEFGYSGYSDTRDQPAAG
WEYNQEPSDRGFRHGSAPSSTEKVLEWSDRPDEDYHSAPNAGAEPQEETLQQVDEEAGQD
DVQPGQNSANDDSAVDTAYVQKYTFPPGWGDVSSIPATGWD
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggggtatcattcggatgaggaattttcagtggctggtgataagccggaagttgagttc
atcgattatcagaatgataacacttttcaggattatcaatctgatgatggtcctgtggtt
gttacgactcctttcccttttgagaacggcaagcctaaatctgtccttgttggagacaca
tccgcagataccatttgcatagagaatacctcttctgaacctgtaaacttgtggagtgtt
agaattttctcttcaaatccagaagatagttatttgctgtccatgatgacaccaccgact
aatgatgctgatgaagaggcaaagaaggcttttcttggtttgacttctgtggaagatcgt
acacttcagcctgggcaaactttaacaatctggctgtcctgtatgccaaaagaaattggt
ttacatacatcaatagtgcatgttgatattggggacgagaagattgagcgtgtggctttt
ctattggctgatgataatgtttcaaaggcattattttctgataaaccttattccagagga
cgtggcagtcaaggaaagaaatttgagtgttctacatttgtgccaggtacccggccggtt
cggcagcacacccaaggattcaagtataagttacctcagtatgcaatacctgtagaagtc
cgtgagctcattgagtgtaaacagagacctgatgtcctatctgaagagctgagcatcaga
aactatgcgaaattctttagcactcttttagtcatggaagaaattaatttggaggaggag
atgagaacatataacatggagggtgtctcaatgagaaggaggggtaatggttttttgtct
cttgaggtccttggattggcagaaaaaaggccttcactaatcagtggagactatatagtc
gccagacatgctggaagtaatgataggccttatcaaggcttcattcacaaggttgaagct
gatgagatatttttgaaatttgatgattcgtttcacaacgctcaccatgacaggaataag
tatgacgctagcttcacatataatagattgaacatgagaaggcaatacaagtctgtccac
gaggcagaacttattggacctgacattctgtttccctcccaatcccgttatagaagtgtc
aagaaggttccatttaaacccctgaatcctgacataaacactgagcaagctgatgcagtc
gggatgatacttggctgccgaggggttccaccatacttgatatatggacctccaggaact
ggcaaaaccatgacccttgttgaggccattttgcagctctatacatccaataggagggca
aatgttctcatatgtgctgcttccaatagcgctgctgaccatatattggaaaaactgcta
tctgctagctatctgatccgcccaagtgatatctttaggctaaatgctcctagtcgtcaa
tacgatgatgttaatcctgattttatccggttctgcttctttgaagatactgtgttcaag
tgccctccaatgcgagcattaatgcggtacaggatagttatatcaacctacatgtattca
tcaaccctacaggctgagggtattcgccgggggcatttcacacacattttcttggatgag
gctagccaaatttctgaaccagaggcaatggttcctgtgtcagccttctgtggaagagac
accgttgttgtgttagcaggagatcctatgcaattagggccggttgttttctgtaaacaa
gcggataaggatggtttggggacatcgtatctgcaaaggctgctgtgtgactttgagcag
taccatttggaggaccctaactatgtgaccaagctactgaggaactaccggtgtcatcca
gcaatcctagagctaccatcgcagcttttctacgggagtgaactgattgcttgcaaggga
gatgaagtgccatctgtctacgattgcattggtcttcccaacaagtcattccctgttctt
tttgttggaattcagggatgtgatgaaagagaaggcaacaacccatcatggttcaacaga
atcgaagctagtaaagtagtaaatatcatcaggactcttacaagggatggtgaagtccgt
gaagctgatatcggggtcattactccatatcgtcaacaagttgtcaagataaagagggcc
ctagagacatttgagatgcctgacctgagagtcggaagtgttgaacaattccagggacaa
gaaagggaaataattatcatctcaacagtcaggtcaacggtaaagcataatgagaatgac
aagatcttcaatcttggtttcctgaccaattaccgaaggttcaatgttgcaataactcgt
gcgaagtcgttgctcatcatagtaggaaaccctcacattatcactaaggatcggtactgg
gataagctcctgaggtactgtgcagacaatggttcttatcaaggatgtccacttccgcca
ccagaagaagaattcggatattcaggatacagtgacacccgagaccaacctgctgctggg
tgggagtacaaccaagaaccctctgaccgtggcttcagacatggcagcgccccatcttcc
accgaaaaggtgttggaatggtccgacaggccagatgaggactaccattcagctcccaac
gcaggagcagaacctcaggaggagacactgcagcaggtcgatgaagaggctgggcaggat
gacgtgcagcctggccagaactcagccaacgacgacagtgcggttgacaccgcatatgtg
cagaagtacacctttcctcctggttggggcgacgtctcgagcatccctgcgacaggctgg
gactga
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