Lolium perenne (perennial ryegrass): 127297454
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Entry
127297454 CDS
T08650
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127297454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127297454
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127297454
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127297454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
127297454
NCBI-ProteinID:
XP_051183718
LinkDB
All DBs
Position
4:complement(404509781..404529021)
Genome browser
AA seq
2418 aa
AA seq
DB search
MVPLNPDVAAEVRLMLQAATDAASDSIRRELCQLVDCGIDGCLLLLQVCFDQVMLSAREV
DNFQLKHALLSAIFRYCLNKTYFSTCFCEALLPISDTDGLLETLSNVLELSVAEKVGIGL
ALSDSDNSAMKLKGQQFAITQIEELCLNPNQSVSNDQVHEIVVFLHQTDGLSKHMDTFSN
ITSLLEVRQSPFFAPFPIKQFDAQSTNPSRHLETYFASTNDDFESLLSEIGKEISMADIV
TELGYGCTVDSTQCKEILSTFEPLDDTAVSKLLGAVIGTQNSLGEAHNTYATFVSAIRNI
PMSESPQLTTWNTDVLVDSINELAPSTNWVHVMENLDHEGFIVPDEAAFYLLMSIYGRAC
KEPFPLHAVCGSMWTNTEGQISFLKHAVSAPATIFTFAHCSRQLALPDFASLSPGNHAWF
CLDLLEVLCQLAEVGHTVSVRSMLEDPLGHCPDLLLVGLGHVNTAYNLLQFEVLSCAFPA
ILKDAAKSNVVNHLWHINPCLTLRGFVGAHSDPSCLLRIVDVCQDMKILSAVLDSTPFAF
SIRLAAAASRKDHSHLEKWLTEKLTLYNDSFLEECVDFMKETMNATSYVVEGATEQPQAN
VMDIYWEACPPFIKVLQSYSGQLLPNQLLDKLRELFTSYESRNHGSAVRDIPTPEGGSDD
VEVEANAYFQQMFSGQISVDAMIQMLSRFKESLDKREQAIFNCMISNLFEEYKFFTKYPD
KQLKLAAVLFGSLIKHQLVAHLGLGIALRAVLDALRKSVDSKMFVFGTTALEQFMDRVIE
WPQYCNHILQISHLRGTHAEMVSAIERALARISSSQNEPSIGNMFSADHLVSGSSSIETM
EASEPSWQLMGTSPTQLGRTPSYPLQQRQQSVLGDRSKVSMATSQNKIILPSQPSVPSAP
ADSATNIKTTVPPSALPHSASMSTTAHATGFLRTRSTATGLPRQHSYTTGFGAALNIETL
VAAAEQRDRPIETPPSEVQDKVLFMINNISTSNMEAKAKEFDEVLQEQYYPWFAQYMVMK
RASIEPNFHDLYLKFFDKLNSRSLSKEMLKATYENCKALLRSDLIKSSSEERSLLKHLGS
WLGKFTIGRNQALRAKEIDPKSLIVEAYEKGLMIAVIPFTSKILEPCKSSIAYRPPNPWT
MGVLSLLAEIYNLPNLKMNLKFDIEVLFKNLTVDMKDVKPTSLLKDRGREVEGNPDFSNK
DVASQTQVSVEVSSGINPPINHMELQPEVNNTSRAMSLPTILNQYAAPGRLPPNSMVEDE
KIALMMPEQFSSHTLAQVSPSQAPLASLSPSPLSLSQLLSLIPHDEIRFKINSKLGSLGS
QLQFSKIMGVALDKAIKEIILPVIERSVTIASKTTKELVLKDYAMESDYSAANRAARLMV
GTLAGSLAHVTCKEPLRVALSSHLRSLIQNLTSNSETVEQVIHILINDNLDLGCASIESV
ATRKAVDSIDGEIAQSFSQQRKKREAAGPAYYDSFTYAQGPFAPVPEVLHTKPESAAQQR
VYEDFVHVWQSHSQNVSAAGSGSSGTSAVSSNFGGVPRAYSPNPAPASSAFLTAQTAPLT
SAQPTELLVSEELIPGAAQLYSDSTAQLGTSDSSGWLGGTIDAASTSPPLISNDLPVGGI
TDSSAVMSFPATVSVDNRGSVLPDAFNTGDALERYGQVSQKMEALIAKDGKDGEIKSVIA
EVPDILLKCVNRDEAALAVAQKVFNSLYDNASNSASIMSYVATLVAVRDVCKLVVREITN
WVISLDDEKKFNFDIIFCLIRSELLNVGEYNVHLAKLIDGGRNKVAIEFGMSLVQTLITQ
DSAIISELHDVFEALSKISRRPGSPESLPQLLEIARSNANNAPGFAFGKDEKAIQSKDKK
VLFSRTNKEENSVNDTTHADSTAFQEQVAHLFSEWCQVCDHPSASDAAYSRYVMQLQHIG
LLKGDEFTERFFRVLTELAVTHSLISEQIVAPGGLSQHSSHISYLPIDSYSKLVSMVLKY
SSVEIGPNKVSLLSKILSVTVRVIQKDAEEKKTSFNPRPFFRLFINWLNDLTTSDVHHDG
ANFQQVLTAFANAFHALQPLRIPGLSFAWLELVSHRSFMPRLLTCNLQKGWPLFHGLLVD
LFKFMEPYLRNAELVEPVHLLYKGTMRVLLVLLHDFPEFLCDYHFSFCDVIPSSCIQMRN
VILSAFPRSMRLPDPSTPNLKIDLLPEISKAPRIMSDFEGALRSKHMKADVDEYLKRPDG
SSFLSDLKQKLLLPQNEASIAGTRYNVPLINSLVLYIGIQAVQQLQLNKANASAAAQQIS
HSQMDIFQIETATDFFRNLVTNLDTEGRYLLLNAIANQLRFPNNHTHYFSFIILYLFAEA
TVDNVQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIHIAPEIKMLFES
VAKSCAGKAADDVPDGSH
NT seq
7257 nt
NT seq
+upstream
nt +downstream
nt
atggtcccgctcaaccccgacgtcgccgccgaggtgcgcctcatgctccaggccgccacc
gacgccgcctccgattccatccgccgcgagctctgccagttagttgactgtggtattgat
ggatgtcttctgctgctccaagtctgtttcgatcaagtaatgttgagtgccagggaggtg
gacaacttccagttgaaacatgctcttttatccgccattttcagatattgtctcaataaa
acatacttcagtacttgtttttgtgaggctctgttgcctatatctgatactgacggtctc
cttgagaccctgtccaatgtcctggaactctcagtagctgagaaagttggtattggtctt
gcactgtcagactctgataattcagccatgaagctgaaagggcaacaatttgctatcact
caaattgaggagttgtgtttgaatcctaaccaatcagtatccaatgaccaagttcatgaa
attgtcgtattccttcatcagactgatggcctgtcaaagcatatggatacttttagtaac
attacttctcttctggaagtcagacagagtccattttttgcccctttcccaataaagcag
tttgatgctcagtcaacaaatccgtcaaggcatttggagacgtactttgctagcacaaat
gatgattttgagtcacttctttctgaaattgggaaagaaataagtatggcagacattgta
accgaattgggttatggatgtacagttgatagcacacagtgtaaggaaattctctcaact
tttgagcctcttgatgacacggcagtgtctaagttgctcggggcagttattggcactcaa
aatagtcttggagaggcccataacacatatgcaacctttgtatctgctattcgaaatatc
cccatgagtgagtcacctcaattgactacatggaacacagatgttcttgtggattcaatc
aacgaacttgccccaagtactaattgggtgcatgtaatggaaaatcttgatcatgagggt
ttcattgttcctgatgaagcagctttctatttgctgatgtctatatatggccgtgcttgc
aaggagccctttccgcttcatgctgtttgtgggtcaatgtggacgaatacagaaggccag
atatcatttttgaagcatgcagtttctgctcctgctacgatatttacattcgcacattgt
tcgaggcagctggcacttccggactttgcaagtctcagtccaggtaatcatgcttggttc
tgccttgaccttctagaggttttatgccagctggctgaagttggacacactgtgtctgtg
cgatcgatgcttgaggatcctttggggcattgcccagacctcttacttgttggtcttgga
catgtcaatactgcttataatctcctccaattcgaagtgttatcctgtgcatttcctgct
atactgaaggacgctgcaaagagcaatgtggtgaatcatctctggcatatcaacccttgc
ctcacccttcgaggatttgttggtgctcattctgatccaagctgtcttctgagaattgtt
gatgtgtgtcaagacatgaagatcttatctgctgtcctggattctactcctttcgcgttc
agcattagattggctgctgctgcttctaggaaagatcacagtcatcttgagaaatggctg
actgagaagttaactttatacaatgacagttttcttgaggaatgtgttgatttcatgaaa
gaaactatgaacgccacatcttatgtggtagaaggtgccacggaacaacctcaagctaat
gtcatggatatttattgggaggcctgtcctccctttataaaggttctccagtcttactcg
ggacagctcttacccaaccaactcttggataaactaagggaattatttacttcgtatgaa
tcaaggaatcatggttctgcagtaagggacatccctaccccggagggtggttcagatgat
gttgaagtagaagcaaatgcgtattttcagcagatgttttctggacagatcagcgttgat
gctatgatacaaatgctcagtcgcttcaaggaatctctggacaagcgggagcaagcgatt
tttaattgtatgatctcaaatctgtttgaggaatacaagttctttacgaagtatcctgat
aagcagcttaaactagctgctgtgctgtttggatcccttattaaacatcaacttgtggct
caccttggacttgggattgctctacgtgctgttcttgatgccttgcgcaagtctgttgat
tcaaagatgtttgtgtttggcacaacagcgctagagcagttcatggatcgtgtaatagag
tggccacaatactgcaaccacatattgcagatttcacatctccgtggaactcatgctgaa
atggtctctgcaattgagcgagcccttgccaggatttcatcaagtcaaaatgagcccagt
attggcaacatgttttctgcagaccaccttgtttccggatcgtcatctattgaaacaatg
gaggcttctgaaccatcatggcagttgatgggtacctctccaactcagctaggaaggaca
ccttcttaccctttgcagcaaaggcaacagagtgttcttggggataggtccaaggtctcc
atggccacctctcagaataagatcattttacccagtcaaccttcagttccttctgcacct
gctgattcagcaactaatataaagacaactgttccaccctctgcactacctcactctgca
agcatgtcaaccactgctcatgccactggttttctgcgcactcgaagtaccgccacaggc
ttgcctcggcaacattcgtacactacgggatttggagctgctttaaatatcgagaccctt
gtagcagcagcagagcaaagagatagaccgattgagactcctccatctgaagttcaggac
aaggtcttgtttatgattaacaatatatctacctctaatatggaagccaaggcaaaagaa
tttgatgaagtgcttcaggaacaatattatccttggtttgcacaatacatggtcatgaaa
agggcaagcattgaaccaaattttcatgatttgtacctgaagttctttgacaaacttaac
tcaagatccttgagtaaggagatgctgaaagctacatatgagaactgcaaggctttgtta
agatcagatcttatcaaatctagttctgaggaacgctcgttgctaaaacatttgggcagt
tggttgggaaaatttactattggaaggaaccaggcattacgagctaaggaaattgaccca
aaatctcttattgtggaggcatacgagaaaggactgatgattgctgtaattccattcact
tcaaagattcttgaaccttgcaagtcaagtatagcatatcgtcctccaaatccgtggaca
atgggagttcttagtctacttgctgagatctataatctgccaaacctcaagatgaatctg
aaatttgacattgaggtcctgtttaagaatctcaccgtggacatgaaagatgtaaaaccc
acttcccttcttaaagaccgaggacgtgaagttgagggaaacccagatttttcaaacaaa
gatgttgcatctcaaacccaagtgtctgtagaagtctcttcgggcattaaccccccaata
aaccacatggaactgcagcctgaagtcaataacacttctcgtgccatgagccttcctact
atactgaatcagtatgctgctcctggacgtctacctcctaacagtatggtggaagatgaa
aaaattgctctaatgatgcctgagcaattctcttcgcacaccttggcccaggtctcacca
tcacaagcaccattagcatcgctatcgccatctcccctctctctcagtcagcttttgtcg
ttgattccacatgatgagatacgcttcaagataaattcaaaacttgggtctcttggctca
caattgcaattcagcaaaatcatgggcgttgctttggataaggctatcaaagagataata
ctccctgtcatcgaaagaagtgtcacaatagcaagcaaaactacaaaagaactcgtcctg
aaggattatgcaatggaatcggattacagtgctgcaaatcgcgctgctcgtttgatggtc
gggacattagctggaagtttagcccatgttacttgcaaggaaccgcttcgcgttgcacta
tcttctcatcttcgaagccttattcaaaaccttactagcaacagtgagaccgtggagcaa
gtaatccatattctaatcaacgacaatttggatcttggctgcgcaagtatcgagtctgtg
gcaacccgcaaggctgttgattcgattgatggcgaaatagctcaatctttttcacaacaa
aggaaaaaaagagaggccgcgggtcctgcatattatgactcttttacttatgctcaaggt
ccatttgcccctgtacctgaagtactccatactaagcctgagtcagctgcccaacaacga
gtgtatgaggattttgttcatgtatggcagagccacagccaaaatgttagtgctgcaggt
tctggttcatctggtacatctgctgtctcgagcaattttggcggcgtacctcgagcttac
agcccaaatccagcaccagcttccagtgcttttttgactgctcaaacagctccgcttacg
tcagctcagcctacagagctgctggtgtctgaggaattgattcctggtgctgcacaacta
tatagtgattctactgctcaacttgggaccagtgactcttctggctggcttggtggaacc
attgacgctgcatccacatctcctcctttgatatctaatgatcttcctgtgggaggaata
acggattcaagtgctgtgatgtcatttccagctacagtttctgttgacaatcgtggatct
gttttacctgatgcttttaatactggtgatgccttggagagatacggacaagtttcacaa
aagatggaggcgttgattgcgaaggatggaaaagatggggaaatcaagtctgttatcgcg
gaagttcctgatatcttactcaaatgtgttaaccgggatgaggctgcattagctgttgca
caaaaggttttcaacagtttgtacgacaatgcatcaaatagtgccagtatcatgtcgtat
gtagcaactttagttgcggttcgagatgtctgcaagcttgttgtcagagagatcacaaat
tgggtgatctccttggatgacgagaagaagtttaactttgacataatattttgccttatt
cgttctgaattgctgaatgttggggagtacaatgttcatttggcaaagctaattgatggt
ggaagaaataaggttgcaatagaatttggcatgtcacttgtccagacattgattactcag
gactctgctatcatctcagaacttcatgatgtttttgaggcactatcaaagatttcaagg
aggccaggttcacctgagtcgttgcctcagttgcttgagattgcaaggagtaatgccaac
aatgctcctggttttgcttttgggaaggatgaaaaagccatacagtcgaaggataaaaag
gttctctttagtcgaacaaacaaagaggaaaacagtgttaatgacaccacccatgctgat
tctactgcttttcaagaacaggttgcacacctattttctgagtggtgtcaagtatgtgat
cacccaagtgcttctgatgcggcatatagtcgttatgttatgcaattgcaacatattggc
ttgctgaagggagatgaattcactgagcgcttctttcgagttctcacggaacttgctgtt
acacattctctgatctctgagcaaattgttgctcctggtggattgtctcaacactcatca
catatatcatatctccccattgattcatattcgaagcttgtgtctatggtgctaaagtat
tcttcagtggaaataggaccaaataaagttagccttctttccaagatcctgtcagtgaca
gttagggtcattcagaaagatgctgaagagaagaaaacttcattcaacccccgaccattc
ttccggctgtttataaattggttgaatgaccttactacttctgatgtccatcatgatggt
gctaatttccagcaggttttgactgcatttgcaaatgcattccatgcactgcaacccttg
agaattcctggtttgagttttgcttggcttgagttggtgagtcatagaagcttcatgcca
agactgctaacctgcaatttgcaaaaagggtggcctcttttccatgggctgcttgttgat
ctgttcaaattcatggaaccatatttgagaaatgctgaacttgtagaaccagtgcacctt
ttatacaaaggaaccatgcgagtactgcttgtactactacatgactttcctgaatttttg
tgcgactatcacttcagtttctgtgacgttatcccttccagttgcatccaaatgcgcaat
gtcattcttagtgcttttccacgcagcatgagacttccagatccatctactcctaatttg
aagattgatctgctacctgaaatttcgaaagctccacgaatcatgtcagatttcgagggt
gctttgaggtcaaagcatatgaaggctgatgtcgatgagtatcttaagagaccagatggc
tcttcctttctgagtgatctgaagcaaaaattgctgctgcctcagaatgaagctagcatt
gccgggacacgctataatgtgcctctgattaattcgcttgttctctacattggcatccaa
gcggtgcaacaactgcaactgaacaaggcaaatgcatctgccgcagcccagcagatcagc
catagtcaaatggatatttttcagattgaaacagccactgattttttcagaaaccttgta
acaaacttggatacagaggggcggtaccttcttctgaacgcaatcgctaaccaattgcgg
tttcctaataaccacacacactacttctccttcatcattttgtatctctttgctgaagct
acagtggacaatgtccaggagcagataaccagggtcctcttagagcgcctgatagtgaac
cgtccccatccttggggattactcattacttttatcgagctgataaagaaccctcgctac
aacttttggaaccgatcgttcatacatattgcgcctgagattaagatgctgtttgagtcc
gtggcaaagtcgtgtgctggaaaagctgcggatgatgtccctgatggcagccactag
DBGET
integrated database retrieval system
