Lolium perenne (perennial ryegrass): 127300304
Help
Entry
127300304 CDS
T08650
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127300304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127300304
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
127300304
mRNA cycle factors
Common to processing body (P body) and stress granule
127300304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
127300304
NCBI-ProteinID:
XP_051186362
LinkDB
All DBs
Position
5:154960507..154967341
Genome browser
AA seq
1023 aa
AA seq
DB search
MMTVPMDSTAAPPPHDLAKRLFKKNAELKSLLEKSAQSKVPSDPNIWLQMRENFEKMILA
DHDFCEKHEIEYILWQLHYKRIEEFRHHISTAGSAAAQNGKSSANAERIKRIKSAFRGFL
SEASGFYHDLMFKIKSTYGLPVGYFSESPDNAANNDKKADDVKKALVSCHRCLIYLGDLA
RYKGMFGDGDSATREYAAASSYYKEAAAICPSSGNPHHQLAILASYSSNEVVAVYRYFRS
LAVDTPFSTARDNLILAFEKNRQSYAQLPSNNKVATARTLPPRSAGRGRGRGEIRFQPKD
VNTEAASKEREQSMPDTLKSFFVRFVRLNGILFTRTSLETFEELFDMVRNDLKILLSSGP
SEELNFGSDAAENALAMVRLVAILIFTVHNVRKEPDSQSYAEIVQRRVLLQNAFTAAFEF
VGRILKRCSELRDIASSFYLPAIVVYIEWLACHPELAADSEMDEKHANARSFFWNQCVSL
MNKLILTNLASFDCDDDEACFFDMSVYEEGETGNRLALWEDFELRGFLPLVPAQLILDFS
NKHTFGNDGSTKEKKARAQRILSAGKALLSFVQIDQLRIFFDPSSRKFVLAKEPPVFEAA
ISTRRSSNAPAANAVELEHETVSRFDAVAANVGAMQAGVQLCSEGEDDEEIVFKPTASEK
FPKVLTEQPINGYIQPVQMSTAGWPTIAIQSTASVSAPGNGNVSGPLPMSSVGWAPNGVQ
EVIPSNVPISSPYEFVQPVGIPTSSWASNGAPLGPLNTIPAFSGVVSDPRVSASMIPQMN
GPDYLKSLFEQEKLLMMGLNNVNLAGNGFLDQRFQGGLSGLQSMGYSPHVSVESGRNNAS
LMHNQAKANEETIPSTSDSIVPSVAASGGVTMKLTDAPETVSKKNPVSRPSRPVGPPPGF
NHVTPKRHDEFASLGKLQHQQIDDYSWLDGYQPSVDYVHNARAIYPDVSTTTSAFTPPFP
FPGKQQVSGVHAQTANEKTWQDFHLFDPAKQNMVQNHQQINQQSGQVAEKQSAKPIGSGR
YLV
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgatgactgttcccatggattctactgccgccccgcccccgcacgacctcgccaagcgc
ctcttcaagaagaacgctgaactcaaaagtcttctggagaagtcggcgcagtccaaggtc
ccctcggaccccaacatatggctgcagatgcgcgagaacttcgagaagatgatcctggcg
gaccacgacttctgcgagaagcacgagatcgagtacatcctgtggcagctgcactacaag
aggatcgaggagttcaggcaccacatcagcaccgcaggatcagcggcggctcagaacggg
aagagcagtgccaacgcggaacggatcaagaggatcaagtcggcattcaggggcttcctt
tcggaggcgtctggcttctaccatgacctgatgttcaagatcaagtctacctatggcctc
cctgtcggttacttctccgagtctcctgacaatgctgcaaataatgataagaaagcggat
gatgtgaagaaagccctggtatcatgccaccgctgcctcatatatctgggtgatctggcc
cgctacaagggtatgtttggtgatggcgattctgcaactcgtgaatatgccgcggcttct
agttactacaaggaggcagcggcaatctgcccttccagcggcaatccgcaccatcagctc
gcaatattagcgtcttactcaagcaacgaggtagtggctgtctacagatactttcgaagc
ttagctgtagacactcccttctctacagcacgggacaacctgattcttgcttttgagaag
aatcgccagagctatgcacagctgccaagcaacaacaaagttgccacggctaggacacta
cccccacgatcagctgggaggggcagaggacgcggcgaaataaggtttcagcccaaagat
gtcaatactgaagcagcttcaaaagagcgagagcaaagtatgcctgatacactgaagtcc
ttctttgtgcggtttgttagactgaatggaattcttttcacaaggactagtttggaaaca
tttgaggaactgtttgatatggtgcgcaatgatctgaaaattcttctctcttctggtccc
agcgaagagcttaattttggttctgatgctgcagagaatgcattagctatggttcgactc
gttgcaatccttatattcacagtgcacaatgtgagaaaggaaccggatagccaatcgtat
gctgaaattgtgcaacgcagggtactgcttcaaaatgcattcacagctgcttttgagttt
gttggacgtattctcaaaagatgctcagagcttcgtgacattgcatcaagtttctatctt
ccagccattgtggtctacatcgaatggctggcatgccatccagagttagctgctgattca
gagatggatgagaagcatgcaaatgctcgttctttcttctggaatcagtgtgtctcactt
atgaataagctcatcctcacaaaccttgcttcctttgattgtgatgatgacgaggcatgc
tttttcgatatgagcgtgtatgaagaaggtgaaactggcaatcgacttgcattgtgggaa
gatttcgaattaagggggtttttgcccttggtgcctgcgcagcttattttggacttttca
aacaagcacacatttggaaatgatggaagcaccaaggagaagaaagcacgggctcagcgg
atactttctgcagggaaggctctactaagtttcgttcagattgatcaactgagaatattt
tttgatccatcttcaagaaagtttgttttggccaaggaacctcctgtttttgaagctgct
atctctactcgtagatcttccaatgcacctgcagcgaatgctgttgagctggaacatgaa
actgttagcagattcgatgcagtggcagctaatgttggagcaatgcaggcaggagtacag
ttgtgttctgaaggagaagatgatgaagaaattgtttttaagcctacagcttctgagaag
ttcccgaaagtacttactgaacaacccattaatggatacatccagcctgtacagatgtct
actgctggttggccaaccattgctatccagagtactgcatctgtatcagctcctggtaac
ggtaatgttagcggaccacttcccatgtcttctgttggttgggctcccaatggtgttcaa
gaggtcattcctagtaatgttccaatatcgtctccttatgaatttgttcagcctgttggg
attcctacatccagctgggcaagtaatggtgcaccacttggtcctctgaacacaatacca
gctttctcaggtgtcgtctctgatccgcgtgtgtctgcatcaatgattccacaaatgaat
ggcccagattatttaaaatcgctctttgaacaagaaaaactcttaatgatgggactgaac
aatgttaatttggctggaaatggatttcttgaccagaggtttcaaggtggattgagtgga
ttacagtcgatgggatattcaccacatgtatctgttgaatctggtcgtaacaatgcaagt
ttgatgcataatcaggcgaaggccaatgaagagactatcccatctacttctgattcaatt
gtaccgtcagtagcagcatctggtggggtgacaatgaagctcactgatgcacctgaaact
gtatcgaagaagaatcctgttagtcgtccatcaaggcctgttggtcctcctccaggtttt
aaccatgtcacaccaaagcgtcacgatgagttcgcgtcattggggaagctgcagcaccaa
cagattgatgattacagttggctggatggctaccagccatcagtggactatgttcacaac
gcaagagctatttatcctgatgtttccactactaccagtgcattcaccccccctttccct
ttcccggggaaacagcaggtctctggggtgcatgcccaaaccgccaatgagaaaacatgg
caagatttccatctttttgaccctgcgaaacagaatatggtccaaaaccaccagcaaatc
aatcagcaaagtggtcaagtcgctgaaaagcagtcagcaaaacctatcggatctggtcgt
tatcttgtgtga
DBGET
integrated database retrieval system
