Lolium perenne (perennial ryegrass): 127300353
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Entry
127300353 CDS
T08650
Name
(RefSeq) endoribonuclease Dicer homolog 3a
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
lper
Lolium perenne (perennial ryegrass)
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lper03036
]
127300353
Chromosome and associated proteins [BR:
lper03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
127300353
microRNA pathway
RISC loading complex
127300353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
Helicase_C
DEAD
ResIII
PAZ
dsrm
DND1_DSRM
Dicer_dsRBD
DSRM_2
PCDO_beta_N
CbiA
Motif
Other DBs
NCBI-GeneID:
127300353
NCBI-ProteinID:
XP_051186415
LinkDB
All DBs
Position
5:158585385..158597957
Genome browser
AA seq
1750 aa
AA seq
DB search
MRPGLMIASYELGDSSMAEAEARAEATRFTAGGEAAAAVSDVNMNPLKRSSESESSAHED
EPDTQKRHKKGFTPRGYQLDVCEVAKKRNTIAMLDTGAGKTMIAVMLMKAFAREIDRSKD
DWKITIFLAPNVQLVEQQCKVIKTHTDFEVGLYCGATRADQWGGDRWREQVSKHQVMVMI
PDVLLNALRKAFFSLDMVNLMIFDECHNATGSHPYSMIMKEFYHHSEYKPKVFGMTASPV
IKKGVSSDLDCEVQFSELEKLLNAKIYTVADREEIELCAPPPEYLKIYYDQRTVSFNDLS
EELALLHSKYDALITALQNKPNYQNEEAYAIAKESRKCISNYSAKILYCLDDVGLLCASE
ATKIYRGWLKVSDATNIQSAPNSSFLHAEISALYPKFFEAVSHVLDLATSSHPGSDVLLN
SESGCVEARNMGYISPKLYELIQIFNSFSNSDHVRCLVFVDRKITARVIERTMKKIGQLS
HLTFSFLTGGSSSVDSLTPKMQKDTLDSFRSGKVNILFTTDVAEEGIDVPDCSCVVKFDL
PKTTRSFVQSCGRARQKASQYILMIERGNVKQDNLVYTISRSKTSMDETALNRESKDLLP
RFFPVNDTNEYIVGTTGAKVTAASSIAVVVEYCNKLPKNKYYTTRPLFESIAHSDGFECV
LTLPSSDVLPPLRGPKARSKKAAKQLVCFDACKKLHQLGVLDESLRPCVVKPLPLPGISK
KATAHSSSDGVGTTKRKELHGTTGVRALYGTWALEKNVVKLQGYRLKFSCNQVGQRYSDF
VLLVDATLEIEGDNLDIDLYLHDKMVKASVAPCGLLELGVQQMEQAKLFQALMFNSLFGK
LFTGSKSSSILREFIFNKNDAFIWNVAKMYLILPIDPTLKPHDNFCINWRVIDEAATTVK
LMKKIYSGDKMNNFEQNDTELIHLANISCEAHALRNVVVLAVHTGRIYTAIHAVDLSANS
TFDGVSDKKETKFHTFTEYFENTHGIVLRHPSQPLLAVKPNHKPHNLLSSKFNEGNHAKT
NGDTSHVNTGDSCVHMPPELLIPLNLSEDILRAFYLFPSLMHRIETLMLASQLRSEISYD
DSNISSFLILEAITTLRCSEDFSMERLELLGDSVLKYAVSCHLFLESPDKDEGHLSSSRA
AIISNAALYGLGMERKIQGYVRDAAFDPRRWLAPGQLSIRPVPCNCSVDSEVVTQDIHVV
EDTPIVKIGQACDKGHRWICSKTISDCVEAVIGAYYVGGGLRAAVAVLKWLGVDAEIEEE
LIFHTILSAPVKNYLPKIGVIGMLEAKLGYTFSSKGLLLEALTHPSERELAERYTYQRLE
FLGDAVLDILITRHLFNSHENTDEGELTDLRSASVNNENFAQVAVKHKLHHFLQHSCRSL
ADQITEYENSLENSSMEKIQLLSDAALRGPKVLGDIVESIAGAILVDAKLDLDVVWDAFR
PLLSPIITPANLELPPFRELLELCSKNGYFLETNFTYGEKIEATLLVQLREKLIVRRSCG
KSKKDAKAHAASKLLEDLEKEGLLIPKNAGRMQQLQKQHGGTASRCNNVFDAMDTQPPTP
TSGKKSDASKIIASLDKPVHVPVNTSRGGPRAALQGGLLIPKNASRNEQLQKQGGTADLC
NLFDAMDTQLPTTTNGKTSSGSKIVASLDKPVNVLVKTSKGGPRAALYEFCQKLQWPVPY
FNSVKVEPSCAKATPQGFSFASTVILSIPNSDVISLTGDSFADKKSTMDSAALLMLQELQ
RRGRLQVQEA
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcctggcttgatgattgcctcgtacgagttgggagattcatccatggctgaagcg
gaagcgagagcggaggccacccgtttcacggccggcggcgaggccgccgccgccgtctct
gatgttaacatgaaccctctgaagaggtcgtcggagtcggagtcatctgcccacgaagat
gaaccagacacgcagaagaggcacaagaaaggcttcactccaagagggtaccagctcgat
gtctgcgaggttgccaagaagcgaaacaccatcgcgatgcttgacacgggagccgggaag
acgatgatcgccgtaatgctcatgaaagcttttgcgagggagatcgacagatccaaggac
gattggaagatcaccattttccttgcaccaaatgttcagcttgtggaacagcaatgcaag
gtgattaaaacccacacagatttcgaagtgggactctattgtggtgcgacgagggccgat
cagtgggggggtgataggtggagggaacaagtatcgaaacatcaggtcatggtgatgata
ccagatgtgttgctaaacgctttacgcaaagctttcttcagcttggacatggttaatctt
atgatattcgatgagtgtcataatgcaactggcagtcacccttattcgatgataatgaag
gagttctatcaccactctgaatataagccgaaggtgttcggtatgacggcatcacctgtt
ataaaaaaaggtgtctcttctgatttggattgtgaagttcagttctctgaactggaaaag
cttctaaatgcgaagatctacacagtggctgatagagaagagatagagctttgtgcccct
cccccagaatatttgaaaatatactatgaccagagaaccgtttctttcaatgatttgagt
gaagagttggcacttctgcattccaagtatgatgcattaataacagctttgcagaataaa
ccaaactaccagaatgaagaagcgtatgcaatagcaaaagaatcacgaaagtgcatatct
aattattcagcaaaaatcttgtattgcctcgacgatgttggtcttctttgtgctagtgag
gccaccaaaatctacagaggttggctgaaagtttctgatgccacaaatattcaaagtgct
ccaaatagttcattcctgcatgcagaaatctcagccctttatccgaagttcttcgaggca
gtgtcacatgtgttagaccttgctactagctcccacccaggtagcgatgtgcttctaaat
tctgagagtggatgtgtggaagcaagaaatatgggttatatttcaccaaagctttatgaa
ctcatccaaatctttaactctttcagtaactctgaccatgtccgatgcctcgtttttgtg
gaccgaaagatcactgctagagttatcgaacggacaatgaagaaaattggacaactctca
catcttacattttcttttcttactggagggagttcttcggtggattctctgacccctaaa
atgcaaaaggacacactggattcgtttcgctccggaaaggtgaacatactatttactaca
gacgttgcagaagagggtatcgatgtcccagactgttcatgtgtagtaaaatttgatttg
ccgaagacaacacgtagttttgtgcagtcatgtggacgagcacgccagaaggcttctcag
tacatactaatgattgagcggggaaatgtgaaacaagataatttggtatataccatttcg
agaagcaagacctccatggatgagactgctttgaacagagagtccaaggatctactccct
cgtttcttccctgttaatgatacaaatgaatacattgtaggcacaacaggcgcaaaagta
actgccgcgtctagtattgccgttgtcgttgaatactgtaacaagcttccaaagaacaag
tactacaccacaagacctttgtttgagtccatcgctcatagtgatggttttgaatgtgta
ttaacactaccatctagtgatgtattgccacctttgcggggtccaaaagcaagaagcaag
aaggcggcaaaacagctcgtttgttttgatgcatgcaagaagctccatcaactgggagta
cttgatgagtcccttcgtccatgtgttgttaagccactgccactgccaggaatttcgaaa
aaagcaaccgctcactcatctagtgatggtgttggtacaaccaaacgaaaggagcttcat
ggtacaactggagtgcgtgccttgtatggtacctgggcactcgagaagaatgttgttaag
cttcaaggctatagattgaaattttcttgcaatcaagttggccagagatactctgatttt
gttctgctggttgatgcaactctagaaattgaaggtgataatttggatattgatctgtat
cttcatgacaagatggtaaaagcttcagtcgctccttgcggccttcttgagttgggtgtt
caacagatggagcaagcaaagctatttcaagcgcttatgttcaacagtttgttcgggaag
ttgtttactggatcaaaatcgtcaagcattctgagggagtttattttcaataaaaatgat
gcatttatctggaatgttgcaaaaatgtatctcattttacctattgatcctaccctgaag
cctcatgacaatttttgcattaactggagagtgatcgatgaagctgctacaactgtcaaa
ctaatgaaaaagatatattctggagacaaaatgaataatttcgagcaaaacgatacagaa
ctaattcatttagctaacatctcatgtgaggctcatgctcttagaaatgtggtggtgctt
gcagttcacacagggaggatatatactgctattcatgctgttgatttatctgccaatagc
acatttgatggtgtatcagacaagaaagaaacaaagttccacacattcacagaatacttt
gaaaatacgcatgggatagttcttcgtcatccttcacagccattactagcggtgaaacca
aatcataaacctcataaccttctttcctcaaagttcaatgaaggtaaccatgcgaagaca
aatggtgacacatcacatgtaaatactggggacagctgtgttcacatgcccccagagttg
ctaattccccttaatttatctgaggacattttaagagcattttatttgttcccctctttg
atgcatcgtatagagacattaatgctagccagtcaactaagaagtgaaatttcatatgac
gattcaaatatatccagctttctgattctagaagctattacaacacttcgatgctctgaa
gacttctcaatggagcgcctagaattattgggagattctgtgctaaagtacgccgtgagt
tgtcaccttttcctggaatctcctgataaggacgaggggcatttatcatccagtagggct
gctataatatccaatgctgcactttatgggcttggaatggaacgcaaaatacaggggtac
gtacgtgatgctgcatttgatcctcgccgatggcttgcaccaggacagctctcaattcgc
cccgttccttgtaattgctcggtagattctgaggttgtaactcaggatattcatgttgtt
gaggacacgcctattgttaagataggccaggcttgtgacaagggacatagatggatctgt
tccaaaacgatttctgattgtgttgaagccgtaatcggtgcatattatgtaggaggtggc
ttaagagcagctgtggctgttctcaaatggctgggtgttgatgctgaaattgaggaagaa
ttgattttccataccatcttgagtgctcctgtgaagaattatcttccgaaaattggtgta
attggaatgcttgaagcaaaactaggctatactttttcatcgaaaggtcttctgctagaa
gctcttacccacccatcagagcgtgaattggcagaaagatacacctaccagcgtctcgag
ttccttggtgatgctgtgttggatatcctcataacacggcatcttttcaatagtcatgaa
aacaccgatgagggggagctgacagatttacggtctgcatcagtaaacaatgaaaatttt
gcgcaagtcgcagtaaagcataagctccatcattttcttcagcattcttgcaggagttta
gcagaccaaattactgaatatgagaatagtttggaaaattcttccatggaaaaaatacaa
cttttatcagatgcagcattaagagggcctaaagttctaggtgatatcgttgaaagtatt
gcaggtgcgattcttgtagatgccaaacttgatttggatgtagtttgggatgctttcaga
cctcttctttccccgattatcacgcctgcgaacctggagctacctcctttcagagagctt
cttgaattgtgcagcaaaaatggatacttcctagaaactaactttacatatggagagaaa
attgaggctactctgctagtccagctcagggagaaactcattgtcaggcgaagttgtggc
aagagcaaaaaagatgctaaagcgcatgcagcttccaagttactcgaggaccttgagaaa
gaaggacttctaatccccaagaatgcaggcaggatgcaacaattacagaagcaacatggt
ggtactgcaagtcgttgcaacaacgtgtttgatgcaatggatacacagcctccaacacca
accagcggaaaaaagtcagatgcttcaaagataattgctagccttgataaaccagtgcac
gtgcctgtgaacacgagtagaggaggacctcgtgcagcgctgcagggaggacttctaatc
cccaagaatgcaagcaggaatgaacaattacagaagcaaggtggcactgcagatctttgt
aacttgttcgacgcaatggatacacagcttccaacaacaaccaacggaaagacatcatct
ggttcgaagatagttgctagccttgataaaccagtaaacgtgctggtgaaaacgagtaaa
ggaggacctcgtgcagcgctgtatgagttctgccaaaagttacaatggccagtgccttat
tttaattctgtgaaagtagaaccaagctgtgcgaaggctacaccacaagggttctccttt
gcttcaacggtaatattaagcataccaaatagtgatgtgatcagcctcacaggagacagt
ttcgcggataagaagagcacgatggattccgctgcactgctcatgctccaggagcttcag
cggcggggtagactgcaagtccaggaggcatga
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integrated database retrieval system
