KEGG   Lolium perenne (perennial ryegrass): 127300598
Entry
127300598         CDS       T08650                                 
Name
(RefSeq) THO complex subunit 3 isoform X2
  KO
K12880  THO complex subunit 3
Organism
lper  Lolium perenne (perennial ryegrass)
Pathway
lper03013  Nucleocytoplasmic transport
lper03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lper00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    127300598
  09122 Translation
   03013 Nucleocytoplasmic transport
    127300598
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lper03019]
    127300598
   03041 Spliceosome [BR:lper03041]
    127300598
Messenger RNA biogenesis [BR:lper03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     127300598
Spliceosome [BR:lper03041]
 Complex C
  Other components
   EJC/TREX
    127300598
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    127300598
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 Beta-prop_WDR3_1st WD40 WD40_WDHD1_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WDR55 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_WDR3_2nd Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_Aladin Beta-prop_EML DSE1_N Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd eIF2A Beta-prop_HPS5 Beta-prop_Vps41 Tricorn_2nd NBCH_WD40 Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_IFT122_2nd CFAP251_N WD_LRWD1 Connectase_N
Other DBs
NCBI-GeneID: 127300598
NCBI-ProteinID: XP_051186690
LinkDB
Position
5:170567085..170574333
AA seq 328 aa
MEGREDDKKGGAAAGSSAPGSRFKNLVSREYYSHKKKVHSVAWNCIGTKLASGSIDHTAR
VWSIDPHGHSKVKDIELKGHTDSVDQLCWDPKHPETVATAAADKTIRLWDARSGKCQVVE
LSGENINITYKHDGTHIAVGNKEDELTIVDVRKLKPIHRQKFPYEINEISWNKTGDMFFI
TTGLGFVEVVNYPSLDVVCKLNAHTAGCYCIAMDPLDRYFAVGSADSLVSLWDVKELLCI
KTFTKLEWPVRTVSFSHSGEFLAYASEDPFIDIANIQTGRSIHQIPSKAAMNSVEWNPKY
NLLAYAGDDKNKYQADDGVFRIFGFEST
NT seq 987 nt   +upstreamnt  +downstreamnt
atggaggggagagaagacgacaagaagggcggcgccgccgccggcagctcggcgccgggg
tcaagattcaagaacctggtgtccagggagtactacagccacaagaagaaggtgcactcc
gtagcgtggaactgcataggcacaaagcttgcctcaggctctattgatcatactgcacgt
gtctggagtattgatccccatggccattccaaggttaaagacattgagctgaaaggccac
acagatagtgtagatcaattatgctgggatccaaagcatcctgaaacagttgctactgca
gctgctgacaagacaattcgtctttgggatgcgcggagtggaaaatgccaagttgttgaa
cttagtggagagaacatcaacatcacatacaaacatgatggcactcacatagctgttgga
aataaggaggatgagctgaccatagtggatgtcaggaagctaaaacccattcacagacag
aagttcccttacgagattaatgagatttcgtggaataaaactggagatatgttcttcata
actactggacttggatttgttgaggtggttaattatccttcccttgatgttgtctgcaaa
ctaaatgctcacaccgcaggatgctattgcatagcaatggatccccttgataggtatttt
gctgtcggaagtgcagattcacttgtcagtctttgggatgtcaaagagttgctatgcatt
aaaaccttcacaaaactggagtggcctgtaagaacagttagcttcagtcacagtggagaa
tttcttgcatatgccagtgaagatcctttcattgacattgccaacattcagactggacga
tcaattcatcagattccatctaaggcagctatgaacagcgttgaatggaaccctaaatac
aacctcctggcttatgcaggagacgacaagaataagtaccaggctgatgatggtgttttc
cgaatatttggtttcgaaagcacataa

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