KEGG   Lolium perenne (perennial ryegrass): 127300818
Entry
127300818         CDS       T08650                                 
Name
(RefSeq) THO complex subunit 6
  KO
K13175  THO complex subunit 6
Organism
lper  Lolium perenne (perennial ryegrass)
Pathway
lper03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:lper00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    127300818
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lper03019]
    127300818
   03041 Spliceosome [BR:lper03041]
    127300818
Messenger RNA biogenesis [BR:lper03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     127300818
Spliceosome [BR:lper03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    127300818
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 EIF3I WDR55 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_DCAF4 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_Nup120_160 Ge1_WD40 v110
Other DBs
NCBI-GeneID: 127300818
NCBI-ProteinID: XP_051186959
LinkDB
Position
5:complement(180200991..180205250)
AA seq 384 aa
MATAAAAAQAQPGTDAREWDEAAYRRGILRERDLSCRTLFRAAFFDQPDDSDPDVLLAAA
SSDGSLASFSLSSCIAASAPNHASPQPVAAALVDPVCIVQAHSGPAYDVKFYNDLHQPLL
FSCGDDGRIRGWRWHEMQSCLLPLYLQGDHVEPVLDLVNPQHEGPWGARSPIPENNAIAI
SKQDGSIFAAAGDACAYCWDVESGKCKMTFKGHTDYLHSIAVREANHQVVTGSEDGTARI
WDCRSGKCTQTIHPVQNNKFEGSWVGCIAIDASESWLACGTSSGISVWSLLSNECIFNAN
CGAPVQDLLFDKNQILAVGAEHALSRFTINGAVLSQIKCAPPSAFSISMHSSGMAAVAGH
GGLVDVISGFGSHLCAFRCRGLEK
NT seq 1155 nt   +upstreamnt  +downstreamnt
atggcgacggcggcggcggcggcgcaggcgcagccaggaacggacgcacgcgagtgggac
gaggcggcgtaccggcgcggcatcctgcgggagcgcgacctctcctgccgcaccctcttc
cgcgccgccttcttcgaccagccggacgactccgaccccgacgtcctcctcgccgccgcc
tccagcgacggctccctcgcctccttctccctctcttcctgcatcgcagcctccgccccc
aaccacgcctctccccagccggtcgccgcggcgctcgtcgaccccgtctgcatagtccaa
gcgcacagcggccccgcgtacgacgtcaagttctacaacgatctgcatcagccgttgctc
ttcagctgcggggatgacggccgcattcggggttggagatggcacgagatgcagagctgc
ctcctgccactctatctgcaaggggatcatgttgaaccagtgcttgacttggttaaccct
cagcatgaaggcccttggggtgcacgctctccaataccggaaaataatgccattgcaata
agcaaacaggatggatctattttcgcagcagcgggtgatgcatgtgcttattgctgggat
gtggaaagtggcaaatgtaaaatgacctttaaggggcatactgactatttgcacagcatc
gcagttcgtgaggcaaaccatcaggtggtaacaggatcagaggatgggacagcccgtatc
tgggattgcagaagtgggaagtgtacacagacgatacatccagtgcagaacaataaattt
gagggctcatgggtcggttgcattgccattgatgcaagtgaaagctggctggcctgtggt
acttccagtggtatatcggtctggagccttctttcaaatgagtgcatctttaatgcgaat
tgtggggcccctgttcaagatctgttgtttgacaaaaaccaaattttagcagttggtgct
gaacatgcactctcccgttttactatcaacggggctgttctttcgcaaataaagtgtgcc
cctccatcggcattttccatctccatgcattcatctggtatggctgctgttgcggggcat
ggaggtctggtggacgtcatctccggatttgggagccatctctgcgcgtttcgttgtcgg
ggcctggagaagtag

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