Lolium perenne (perennial ryegrass): 127301653
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Entry
127301653 CDS
T08650
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127301653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127301653
Enzymes [BR:
lper01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
127301653
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127301653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
127301653
NCBI-ProteinID:
XP_051187888
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All DBs
Position
7:complement(133099133..133103861)
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AA seq
601 aa
AA seq
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MAATRAAAAAASAKQVTRKNFPEALRELAAHMKECDYVAVAALKTGAPTGWRRALPVDTA
ETAYLKAKFAAESFQPLHIAVCPFRVDATSRSTVVAYPYNFHLFPRDELHVGMPSYSFSC
QSSYLSSMARDGFDFNMCIYDGISYLSRVQESLARQKIVIPHLRQPSPSPSTSVADSVFT
TRIKSRIQHWRKGYAEPSKTADDSLVNSLRKLILGGESYGSRPSMSVDVCSDRQVQLVLE
IIGHTFDDLVPLVVPDKSGVARAVRVIFTSSAEDKNLLLMDIRKLEDEHSFKFRGFREVV
DLLSSSQKPIISYNCLSDLTMIHTKFIGPLPPNMHEFMCSLRMVFSSVVDIGHLWREIGP
LRKAKNIQAALSYLQRQYFVPMEIEIPQQDGTNCVTKGGENVLRITKLFAKLSKLLNIRP
KCQSQSGEQCYSVEDYCNIFYPACMAEESDDVDCTNESDTTRTVSTDCVLFLWGFSGISA
KELRSRLTRLHHVFSEDFELRLLDKTCSALIFRSSDAAAGLLRDISSESPSLNDFFSEGL
KAAGFDVYRKACRSGLWDSDLAEALESASSESATSTLSGHGSSEIYWNSSLKLDLKEYLE
C
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggccgccacgcgcgccgccgccgccgccgcgtcagcgaagcaggtgaccaggaagaac
ttcccagaggctctgcgagagctggcggctcacatgaaggagtgcgactatgtggccgtc
gcggcgctcaagacgggcgcccccaccgggtggcggcgcgcgctgcccgtggacaccgca
gagacggcgtacctcaaggccaaattcgccgcggagtccttccagcccctccacatcgcg
gtctgcccattccgcgtggacgccacctcccgctccaccgtcgtcgcctacccgtacaac
ttccatttgtttcccagagacgagctacatgttggaatgccttcttatagtttctcctgc
caatcatcatacttatcatctatggcccgtgatggttttgatttcaatatgtgcatttat
gatggcatctcttacctatcaagggtgcaagaatccttggccaggcaaaagatcgttatc
ccccatcttcgtcagccatctccatcaccaagtacatcggttgcagattcagtttttaca
actagaatcaagtcgagaattcagcattggcgtaaaggatacgcagaaccaagcaaaaca
gctgatgattctttagttaattcccttaggaaactaattttgggtggtgaatcatatggt
tcaaggcccagtatgagcgtcgatgtctgcagtgatcgccaagttcaactggttttggag
ataataggtcacacctttgatgaccttgtacctcttgtcgttccggataaatctggggtt
gctagggcagtgcgtgtcatctttactagttctgcagaggataaaaatcttctcctgatg
gacatcagaaaattggaggatgaacatagtttcaagtttcgtggatttcgagaagttgtt
gatctactatcgtcatcacagaaaccaattatatcatacaattgcttgagtgaccttaca
atgatacacaccaaatttattgggcctcttccgccaaacatgcatgaatttatgtgttcc
ttgaggatggttttctctagtgttgttgatataggccatttgtggcgagaaatcggccct
ttgagaaaagcgaagaatatacaagcagctctgagttacttacaaagacagtactttgtg
ccaatggaaatagaaataccacagcaagatggtaccaattgtgtcacaaaaggtggagaa
aatgttctgagaataacaaaattatttgctaagttaagtaaattacttaatatcagaccc
aagtgtcaatctcaatctggtgagcagtgttactcagttgaagattactgtaacatcttt
tatcccgcctgcatggccgaagaatctgatgatgttgactgcactaatgagtcagatacc
acaaggacagtgagcactgattgcgttcttttcttgtgggggtttagtgggatatctgcc
aaagaattgaggtcccgccttacaagattgcaccatgtcttctcggaagattttgaactt
agattgctggataagacatgctcagctttgatatttcgtagctctgatgctgcagcggga
ttactgagagacataagctcagaaagcccatcgctaaatgatttcttctcagagggtctg
aaagccgcaggtttcgatgtctacaggaaggcttgcaggtcagggctttgggattcagat
ttagccgaggccctggagagtgcttcatcggagtcagctacttcgacgctttctggtcat
ggtagctctgagatatactggaatagctcattgaagctagatctaaaggagtatctggag
tgctag
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