Lolium perenne (perennial ryegrass): 127302906
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Entry
127302906 CDS
T08650
Name
(RefSeq) exosome complex component csl4 isoform X1
KO
K07573
exosome complex component CSL4
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127302906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127302906
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
127302906
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
127302906
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Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
CHASE5
ECR1_N_2
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
127302906
NCBI-ProteinID:
XP_051189589
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Position
5:261711273..261713831
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AA seq
202 aa
AA seq
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MAATAMEHDGGGGAEVVTPGELLGASSSLAAGRGAYADGHSVRASVTGRRRILPPTPGSS
DQQRSTVEVVGHKAHGAVPQPGSVVIARVTKVMARMASADIMCVDSKAVKEKFTGMIRQQ
DVRATEIDKVDMYQSYRPGDIVRALVLSLGDARAYYLSTAKNELGVVSAQSIAGGTLVPT
SWTEMQCELTGQIEQRKVAKVE
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
atggcagccacggcgatggagcacgacggcggcggcggcgcagaggtggtcaccccgggc
gagctcctcggggcctcctcctccctcgcggccgggcgcggcgcctacgccgacggccac
tccgtgcgcgcgtcggtcaccggccgtcgccgaatcctgccccccactcccggctcctcc
gaccagcagaggtccacggtggaggttgtcgggcacaaggcgcacggagccgtcccgcag
ccgggaagcgtcgtcattgcccgtgtgacgaaggttatggctaggatggcttctgcagat
attatgtgtgttgactcaaaggctgtcaaggaaaagttcactggcatgataaggcaacaa
gatgttcgtgcaactgagattgataaggtggatatgtaccagtcatatcgaccgggcgac
attgtcagagctctggttctttctcttggtgatgcgagggcctactacctttcaactgcc
aagaatgaacttggagtcgtttctgcccaaagtatagctggtggtactctggtaccaaca
agttggactgagatgcagtgtgagttgactggccaaattgagcaaagaaaagttgcaaaa
gtggaatag
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