Lolium perenne (perennial ryegrass): 127305108
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Entry
127305108 CDS
T08650
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127305108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127305108
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
127305108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
127305108
NCBI-ProteinID:
XP_051191447
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Position
1:complement(89666600..89674343)
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AA seq
907 aa
AA seq
DB search
MEADEGPPPPPPWKQNKSAAAIDSSSGPLASAAARLSARSRAIPPARDFHFYNNFPSFKS
PVGAAAARADSSLGILGASSLLPKQQQPAFPREDLDDAYDWLVSRNDDLLEMFGASADEF
KALREKEEAAGRKVAPEEMAGDGFQVVYGKKKKKIDMGAEAVGRGDAFGASGSVRMVTMD
KAATSGTKAKVPFHIPTIPRPQDVYHIVVDNTSNPFQHAFLGRSDDGARPLHPLEKLPAV
QLFDRRVLESEPLKPTALDDTPFTYVEDRKTLEVLATKLKNATEFAVDLEHNHYRSFQGL
TCLMQISTRTEDFIVDTLKLRNYLGENLREVFQDPTKKKVMHGADRDIIWLQRDFGIYVC
NLFDTGQASRVLQMERNSLEHLLHHFCAVTANKEYQSADWRLRPLPAEMTKYAREDTHYL
LYIYDVMRLRLLNESSGENDLLLEVCKRSNEICLQLYEKEQLTDSSYLYIHGLKENELSA
RQLAVLSGLYQWRDGIARAEDESTGYVLPNKTLLEIAKQMPVTTGRLKRTVRSKNKFLDQ
HLGHVITTIRNAVANSDAFESIAEQLKKGRLEELMVADAKNSSEDTEMITVACANNDESN
IHPSDESAVVPTLITNVGIASSCTGNVTSGASLGNLRLDSTTAETKSFGTLSGSTDLAYS
EILSNGHQQQVAKATVQVLKRPTAFGALLGKPSSGRKPNIFAGFSSEQTKSKVDKIKSSV
VLPFHHFSGGAKPLATTLPVAKSVHPEPEIICNDPASQMEEVIQLDTGTDDHNFPENNNA
DGQRQCEPEGTELSSPPSELSSGIEQHFQSLNEGRNLQQNQKAPEEPEFNDQLKAFDYAE
ARKNISFGEVRADRRKDNAVARAINKESGDKRRTSKQPGDEEDEGNFQNPRRRQAFPPSG
NRSSTYH
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atggaagcggacgagggcccgccgccgccgccgccgtggaagcagaacaagtcggcagca
gccatcgattcctcgtcgggacccctcgcctccgccgccgcgcgcctctcagcccgctcc
cgcgctatccctcccgcccgcgacttccatttctacaacaacttcccctctttcaagtcc
cccgttggcgccgccgccgcaagggctgactcctccctcggcatcctcggcgcctcatca
ctcctcccaaagcagcagcagccagctttcccccgggaggacctcgacgacgcctacgac
tggctcgtctcccgcaacgacgacctgctcgagatgtttggcgcctccgccgacgaattc
aaggcactgcgggagaaggaggaggctgcagggcggaaggtcgcgccggaagagatggcg
ggggacggattccaggttgtttacggcaagaagaagaaaaagatcgatatgggagcggaa
gctgttggcagaggtgatgcctttggggcttctggttcggtgaggatggtcaccatggac
aaagcggcgacatcagggacgaaggcaaaggtgcccttccacatccccaccatcccacgg
ccgcaggacgtgtaccacattgtggtggacaacacgagcaatccattccagcatgccttc
cttgggcggagcgatgatggtgcccggcccttacacccactggaaaaacttccggcggtg
caactatttgacaggcgtgttcttgaaagtgagccattgaaaccaactgctttagatgac
accccttttacatatgtcgaagaccggaaaaccttggaagtgctggcaacaaagctgaag
aatgcaaccgagtttgctgttgatctggagcacaaccactatagatcttttcagggtctc
acctgcctgatgcagatttcaactagaactgaagactttatcgtggacacccttaagctg
cgcaattaccttggtgagaacttaagagaagtttttcaagatccaactaagaagaaggta
atgcatggggcagatcgtgatataatatggcttcaacgagactttggaatatatgtctgc
aacctttttgacacaggccaggcttcgagagtcttacagatggagcgcaacagcctggag
catcttttgcatcatttctgtgcagtgacagcaaacaaagaataccagagtgcagattgg
aggttgaggccacttcctgctgaaatgacaaagtatgctagagaagatacacactatctg
ttgtacatatatgacgtaatgcgcttgagactgctgaacgagtcttcaggtgaaaatgat
ctccttttggaggtttgcaaacgtagcaatgaaatctgcttgcaattatatgagaaggag
cagctgactgattcatcatacctttacatacatgggttgaaagaaaatgaactgagtgca
aggcagctggctgttctctctggtctatatcaatggagagatggtatcgctcgtgctgag
gatgagagcactggttatgtactacccaataagactctacttgagatagcaaagcagatg
cctgtgaccactgggaggttaaaaagaacagtgaggtcaaaaaataaatttcttgatcaa
catctcggacatgtcattactaccatcaggaatgctgttgcaaattcagacgcttttgaa
agtatagctgagcaactgaagaagggaaggctggaagagttaatggtggcagatgcaaag
aacagcagtgaagacactgaaatgattactgttgcttgtgccaataatgatgagagtaat
attcatccgagcgatgaatctgctgtagttcctacattgattaccaatgtcggtattgct
tcttcctgtactgggaatgttactagtggagcatctttaggtaatttgcggctagatagc
accacggctgaaaccaagagctttgggaccttgtcaggctctactgatctagcatattca
gagatactgagcaatggtcatcagcagcaggtagcaaaggccacagttcaagtactgaag
agacctacggcttttggggctctgttgggaaaaccgtcttctggaaggaagccaaatatt
tttgcaggattttcaagtgagcagacgaagagcaaggtggacaagataaagtcttcggtg
gtactgcctttccatcatttctcaggtggcgcaaaaccactggctactacccttccagta
gcaaaatctgtccacccagagccggaaatcatctgcaatgatcctgcttctcagatggaa
gaagtgattcagttggacactggaacagatgaccacaattttccggaaaacaacaatgca
gatggacagagacagtgcgaacctgaaggtactgagttgtctagccccccttctgagctc
tcctctggtatcgagcagcacttccaatccctcaacgagggcagaaaccttcagcagaac
cagaaagcaccggaagaacctgaatttaacgaccagctgaaggcttttgattacgccgaa
gctagaaagaacatttcatttggagaggttagagctgatagaagaaaagacaatgcagtg
gccagggcaatcaataaagaatctggagataaacggagaacttcgaaacaacctggtgat
gaagaagacgaggggaatttccagaatccacgaaggcgacaggctttcccaccttctggc
aataggagttctacctaccattag
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