Lolium perenne (perennial ryegrass): 127305942
Help
Entry
127305942 CDS
T08650
Name
(RefSeq) THO complex subunit 5A isoform X1
KO
K13174
THO complex subunit 5
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03013
Nucleocytoplasmic transport
lper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127305942
09122 Translation
03013 Nucleocytoplasmic transport
127305942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127305942
03041 Spliceosome [BR:
lper03041
]
127305942
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
127305942
Spliceosome [BR:
lper03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127305942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
RWD
Motif
Other DBs
NCBI-GeneID:
127305942
NCBI-ProteinID:
XP_051192496
LinkDB
All DBs
Position
6:229960495..229965526
Genome browser
AA seq
790 aa
AA seq
DB search
MAAASAMDVEAPARPPTTTTKPNRRSPHDLLAETRASVEEVAARILAIKKDGAPKADLNE
LVAQMSLLLITLRQVNREILMEEDRVKGETEAAKAPVDSTTLRLHNLLYEKNHYVKAIRS
CLDFQTKHPGIELVPQEEFHRAAPADIRDKTLAADAAHDLMLKRLNFELVQRKELCERHE
KLEQQKSILMGTIASQKKFLSSLPSHLKSLKKASLPVQQQLGMLHTKKLKQHHAAELLPS
PLYITYTQLLGQKEAFGENIEVEISGSTKDAQTFAQQQAKEANAGTLSNDDNNRMDDDAI
DEEEDAQRRRSRSRKTSKEANNPAFAYQLHPLKVVLHVYDTEVSGTKRRKLITLKFEYLA
KLNVVCVGSEDSEGVDSNILCNLFPDDTGLELPHQMAKLYAGEAPNFSEKESRPYKWAHH
LAGIDFLPEAPLSAGESNRAARSADLSSGLALYRQQNRAQTILQRIRSRKVAQMALTWQL
NYLTKLKWPQIEHQNTPWASRTPLCNLHSWSLTGFFPEPSACSALMVSEPAGSVDSDTER
RSVTNWQETEGIAEDGELPLVVAAEHTSSGSIMSHSEVSPEVRNHSRGLSLITKSATPSK
LSISHSFGRNEDDLDFLMDSDTELEELACADQETVQGTITIDKSWEDYASREFTMVLSKT
LTNGPKVMLEAKIKISMEYPLRPPLFRLQLISENTVALKWHNDLRAMEAEVNLHILRDLS
VSCEDYILTHQVMCLAMLFDMHFDEGNEKRKVTSVIDVGLCKPVSGTMLTRSVRGRDRRH
TIYWRGADCS
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcttccgccatggacgtcgaggcgccggcgcgtccgcccaccaccaccacc
aaacccaaccgccgctcccctcacgacctcctcgccgagacccgcgcctccgtggaggag
gtcgccgcgcggatcctcgccatcaagaaggacggcgcgcccaaggccgacctcaacgag
ctcgtcgcgcagatgtcgctcctcctcatcacgctccgccaggtgaaccgggagatactg
atggaggaggacagggtgaagggcgagacggaggcggccaaggcgcccgtggactccacc
acgctgaggctgcacaacctgctctacgagaagaaccactacgtcaaggccatcaggtcc
tgcctcgacttccagaccaagcaccccgggattgagctcgtgccccaggaggagttccac
cgcgccgcgcctgctgacatccgggacaagacgctcgcggctgatgctgcccacgacctc
atgctcaagcgcctcaactttgagctcgtgcagcgtaaagagctatgtgagcggcatgag
aaattggaacaacagaagagcattttgatggggacaattgcaagtcagaagaaattcctt
tcaagcctcccgtcgcatttaaaatcactcaagaaagcatcattgccagtgcagcagcag
ctggggatgctgcataccaagaaactgaagcagcaccatgcagctgagttgctcccgtct
cctctgtatataacttatacccagttattaggacagaaagaagcatttggagagaatatt
gaagtggagataagtggaagcacaaaggatgctcaaacttttgctcaacagcaagccaag
gaggcaaatgcaggcactttatcaaatgatgataataatcggatggatgatgatgcaatt
gatgaagaagaagatgctcagagaagaagatcaaggtccaggaagacttcgaaggaagct
aataatcctgcgtttgcatatcaacttcatccacttaaagttgttctccacgtatatgat
actgaagtttctggaactaagcgtcgtaagctaatcaccctgaagtttgaatatttggca
aagttgaatgttgtctgtgttggatctgaagactcggagggggtggacagcaatattctg
tgcaacctatttccagatgacactggtttagagctgcctcatcagatggctaagctttac
gctggggaggctccaaattttagtgaaaaggagtcacgtccatacaagtgggcacatcat
ctagctggtatagatttcctgccagaagctcctttatctgccggggaatctaacagagca
gcgagaagtgctgatttgtcatctgggcttgcactataccgccagcagaatcgtgcacag
actattttgcagagaattcgctctcggaaagttgcccaaatggctctcacgtggcaactt
aattatttaactaagctgaagtggcctcaaatagaacaccagaatacaccgtgggcatca
cgcaccccattgtgtaatctgcatagttggtcattgacagggttttttcctgagccgtcg
gcttgttctgctttaatggtgagtgagcctgcaggaagtgttgacagtgatacagagaga
agatctgtgacaaactggcaagaaactgagggtatcgcagaggatggggaacttccgctt
gtggttgctgctgaacatacctcaagtggttccataatgtcacactcagaggtgtcacct
gaagttcgaaatcattctagaggcttatcccttataacaaagagcgccacgccatctaag
ctaagcatctcacacagttttggtagaaatgaggatgatcttgatttcttaatggatagt
gatactgagttggaggaactggcatgtgctgaccaagaaactgtacaaggtactataact
attgacaaatcctgggaggactatgcttccagggagttcacgatggttttgagtaaaact
ttgacgaatggtccaaaagtcatgctggaagccaagatcaaaattagcatggaatatcct
cttaggccaccccttttcagattacaactcatttccgagaacactgttgctttaaagtgg
cacaatgatctccgtgcaatggaagctgaggtgaatcttcacatcctccgagacttgtct
gtgtcatgtgaggactacatattaacccaccaagttatgtgccttgctatgttatttgat
atgcactttgacgagggtaacgagaaaagaaaagtgacttcagtgattgatgttgggctc
tgcaaacccgtaagcggaactatgctcactagatcagtcaggggaagagaccgcagacac
accatctactggcgaggtgctgattgctcttag
DBGET
integrated database retrieval system
