Lolium perenne (perennial ryegrass): 127306005
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Entry
127306005 CDS
T08650
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
127306005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lper03021
]
127306005
03019 Messenger RNA biogenesis [BR:
lper03019
]
127306005
Transcription machinery [BR:
lper03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
127306005
RNA polymerase I system
127306005
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
127306005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW2_Spt5
KOW4_SPT5
Spt5-NGN
KOW6_SPT51-2
KOW
KOW7_SPT5
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
127306005
NCBI-ProteinID:
XP_051192569
LinkDB
All DBs
Position
6:233351649..233358931
Genome browser
AA seq
1057 aa
AA seq
DB search
MSRRGRGEEDDSEDEEEAAETYDSEEEEEERGGKRPRRARRSGVETFIDDAASEDDDDED
EGVDEDDDDDEDYGGGGGKGSKRMKRASILIDDMAQVDDDVEEDEEGEYEPGFIDDDLPD
NPDEGVRNPRRHSVPMEEEDEDDTDKILAHLADKYGRQPQFDYADEVFTEVDQQALLPSV
KDPKLWMVKCAIGHERETALCLMQKFIDRDDLQIKSVIALEHLKNYIYVEAEKESHVKEA
CKGLRNIFASAKITQVPTKEMTDVLSVTTKSVDLSRDTWVRIKLGIYKGDLAKVVDVDDV
NQKAIVKVIPRIDLQALTDKLTKKLNGLKVEKKKKSFVPPPRLFSVGEAREMNIPVERRR
HRDSGEYFEVVDGLTFEDGFLRKTVSIKAISTHNVQPSLDELEKFRRVGDDINEDVASLS
TLFSNRKKGHFMKGDAVVVVKGDLKNLEGCVEKVEDATVHIRPKQSGLPKTLAFNATDLC
KHFNPGDHVKVVSGAQQGATGMVVKVEGHVLIILSDTTKEHIRVFADHLVESSEVTTGIT
KFGDYELHDLVLLDNLSFGVILKVESEAFQVLKGVPDRPEVVLVKLREIKYKIDRRTSAK
DKPGNTVSTKDIVRVVEGTCKGKQGPVQHIHKGILFIYDRHHLENSGFICAKAQSCLLVG
GSIATSTGMGMDTEDPRLGAFRSPARILQSPGGLPPRGPYMNSGGRFGGGGRGGRGHNAL
VSRCIKIKSGPYKGYRGRVKEVNGALVRVELDSLMKIVTVKRDDIAEPANVETPVRSESR
YSLGSETPMHPSRTPLYPIQTPMREPGATPMRDVLQTPMHNQAWAPMSPRNEAWAPMSPR
NESWAPMSPPRDNQEDGNSGTWGTWGISPAYQPGTPVVRPFEAPTPGSGWESAPGNGFGD
ATFNAPTPTAQPMTPVPASYQPQTPGGQPMTPGNAGMDIMSPAIGDEGGSSWLLPDVMVN
VSRGDGPTSGVVKEVLPDGSCRVALGPSGNGDDVTALPDELEIIRPKKNDRLKIMNGSLR
GVIGKLIGVDGSDGIVRVEGSLEVKIVDLVILGKLAI
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgccgcggccgcggtgaggaggacgattcggaggacgaggaggaggcggcggag
acctacgattcggaggaggaggaggaggagcgcggcggcaagcggccgcggagggcgcgg
cggtcgggcgtcgagaccttcatcgacgacgcggccagcgaggacgacgacgacgaggac
gagggtgtggatgaggatgacgacgacgacgaggactacggcggcggcggcggcaaggga
agcaagaggatgaagcgggcgtccatcctcatcgacgacatggcgcaggtcgacgacgac
gtcgaggaggacgaggagggcgagtacgagcccggctttattgatgacgatctgcccgac
aatcctgacgagggtgtgaggaaccctaggcgccattctgttcctatggaggaggaggac
gaagatgacacggataagattttagcgcacctagcagataaatatggaaggcagccacag
tttgattatgctgacgaggttttcaccgaggttgatcagcaagctctcctgccatcagtg
aaggatccaaagctttggatggtcaaatgtgcgattggacatgagcgagagacagccctt
tgtctaatgcaaaaattcattgatagggacgatctccagattaaatctgtgattgcactg
gaacacctaaagaattacatttatgttgaagcagagaaagaatcccatgtcaaggaggct
tgcaaaggtctgcggaacatctttgcttcagcaaaaataactcaggttcctacaaaagaa
atgactgatgttctctctgtcacgactaagtctgttgatctttcaagagatacatgggtc
cggatcaagcttggtatatataaaggggatcttgctaaggttgtcgatgttgatgatgtg
aaccaaaaggctattgtgaaggtcattcctagaatagatttacaagctctgacagataaa
ttgacaaagaaactgaatggacttaaggttgagaagaagaagaagtcatttgttccacct
ccaaggttattcagtgtcggtgaggcgagggagatgaacattcctgtagaacggaggaga
catagagattctggggagtactttgaggtggttgatggtttaacatttgaagatggtttt
ttgcgcaaaacagtctcgataaaagcaatcagcacacataatgtccagccatcacttgat
gaattggagaaattcaggagagttggtgatgacattaatgaggatgtggctagcttgtcc
acactattttcaaacaggaaaaaagggcatttcatgaaaggcgatgctgtagttgttgtt
aaaggtgatctcaagaacttagagggctgtgtggagaaagttgaggatgctaccgtacac
atccgaccaaaacagtctggtcttccgaaaactcttgccttcaatgcaacagatctttgc
aaacatttcaatccaggagaccatgtaaaagttgtttccggtgctcaacaaggtgcgaca
ggcatggtagtcaaagtggaaggacatgtcttgatcattttatccgacacgaccaaagag
catatccgcgtatttgcagatcatcttgtggagagttctgaggtcacgacggggattacc
aaatttggtgattatgaattgcatgatcttgtccttcttgacaatttatcttttggtgtt
attttaaaggtggaaagcgaagcatttcaggttctcaaaggagtgcccgatagaccagaa
gtggtgcttgtgaaactgagagaaataaaatacaagattgatcggcgcacatctgcaaaa
gataagcccggtaacactgtgtcaactaaggatattgtaagggtagtcgaagggacatgt
aagggaaagcaaggacctgtgcaacatatacacaaagggatactttttatctatgaccgc
caccaccttgaaaattcaggttttatctgtgcaaaagcacaatcctgtctccttgttggg
ggatctattgccaccagcacagggatgggcatggatacagaagatccacgtcttggtgct
tttagatctccagcaaggatcttgcaatctcctggagggctcccaccgagaggaccttac
atgaattctggtggaaggtttggaggaggtggtcgtggtggcagagggcataatgccttg
gtgagtagatgtatcaaaattaaatctggtccatacaaaggatatcgtggccgtgttaaa
gaagtgaatggtgcccttgtgcgtgtggagcttgattcacttatgaagattgttacagtt
aagagagatgatatcgctgaaccagcaaatgttgaaacaccagtccgcagtgaatctcgt
tattcattgggcagtgaaacacctatgcacccatcacgaacgccattgtatcctattcaa
actccaatgcgagaacctggagctacaccaatgcgtgatgtactgcaaactcctatgcat
aatcaagcctgggcaccaatgagtccacgtaacgaagcttgggcaccaatgagtccacgt
aatgaatcctgggcaccaatgagtccaccaagggataaccaggaagatggaaattctggc
acttggggtacttggggaatcagtccagcttaccagccaggaactcctgtagttaggcca
ttcgaagcccctactcctggatcaggatgggaaagtgcccctggaaatggttttggtgat
gctacattcaatgctccaacacctactgctcaaccaatgaccccagttccggcctcgtat
cagccccaaacccctggtgggcagccaatgactccgggcaatgctggaatggatataatg
tctccagctataggtgatgagggcggtagcagctggctcttgccagatgttatggtcaat
gtgtccagaggagatggtcccaccagtggtgtagtgaaggaagttctcccggatggatct
tgccgtgttgcacttgggccatcaggcaatggggatgacgtaacagctctcccagacgag
cttgagatcatcaggccaaagaagaatgacaggctcaagatcatgaatggctccttacgt
ggagttataggaaaactgataggagttgatgggtctgatgggattgtcagggtggaaggc
tcgcttgaggtgaaaatagtagacttggtgattttgggcaaactagcaatttga
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