Lolium perenne (perennial ryegrass): 127306357
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Entry
127306357 CDS
T08650
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127306357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127306357
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127306357
mRNA degradation factors
5'-3' decay
Decapping complex
127306357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EDC4L
Beta-prop_EML_2
DUF445
Beta-prop_TEP1_C
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
127306357
NCBI-ProteinID:
XP_051192929
LinkDB
All DBs
Position
6:complement(202885347..202894165)
Genome browser
AA seq
1328 aa
AA seq
DB search
MASPAGNPNPNPNPNPPFEMSMLFRPPPPNPAAPIFPAVAGPPPPSGPYSYPPATPPFHH
LPYPHYAQDPMPRPVMSYAMPNPNPNPNPNPGARLMQLLGNAGSGHLESAVSMPPPSSDF
TASQPLQLPAMPSAPPARMLSTTSSKVPRGRLLGAGDKAVHNVDSRLPGEAQPPQLEVTP
ITKYTSDPGLVLGRQIAVNRTYIVYGLKMGNIRVLNINTALRSLLRGHTQRVTDMAFFAD
DVHRLASVSVDGRIYVWRIDEGHDEENKPQISGKIEVAIQIVGDAEAYHPRICWHSHKQE
LLFVGIRNYVLRIDTTKVGKGRDFNTEEPIKCHLDELIDGVRLVGKHDGDVTDLSISQWM
TTRLASGSKDGTVKIWDDRKPVPLSILKPHDGQAVYSVAFLTAPERPHHINLITAGPLNR
EIRIWASTNEEGWLFPSESETWNCTQTLELVSSLEPKAEDAFFNQVAVLPQANIILLANA
KKNAIYAVHVEYGLDPASTRLDYIADFTVAMPILSLTGTHESQPDGEQVVQVYCVQTMAI
QQYGLELSLCSPPTSDTTGLGRDPAISRVHDTPLEVAGAESSTGTSFTDSYTVGASSKQS
TIDQTTEFDHKPSAPPLAHTGDGSAHLPSAPLAANMDLTGSGPSLGNRDKDQSALDHQTN
RSTEPVALIRQDTPMPKPLPLTRQDTPMPKDSFGKDEYRDSHSDVKMLPNPRMMFKVGGN
ATHLITPSEIISGALSTAESNQVSKSDGAKIQDGSVSSPRITEVEAKHVDESKSGQELEA
IKEAQAVCESSEKAQNLFEQTVEMVSERSVTTDKYSVEESQPSLDRLVPDHTGAAGENVL
NKSVEMPGRSDNSSVSRDQSSAKEKVLHLQASGQSSPSASAFNSTESSHEPVSSAYPPID
SSSEVADMQSMLQQLIIMQKDMQKQLSTVVIAPIAKEGKRIETSLGRTMEKSIKANMDAL
SARFLEENTKREKAERERMQQMTTLISSSISKDLPAMLEKSLKKEVSSLGPVVARTMTPI
IEKSLGSIIADSVQKAVGDKVVNQLDKSVTAKLEATVARQIQLQFHTSVKQILQDVLRTS
FESLLVPAFEQSCKTMFEQVDSAFQKGMSEHAVAIQQQVEAAHTPLVLTLKETITSASSI
TQSLTSELLDGHRKLLALVTSGNASAQNTNVLQPNNGPITGPPEVEAPLDPMKELGRLIS
ERKFDEAFTVALQRSDVSIVSWLCSQVDLRGLCTMAPLPLNQGVLLALLQQLAVDIYTES
SRKIQWMTDVAMAINPTDQVIAAHVRPIFEQVYAKLAHHRTLPSTNPADISNLRLLMHVI
NSVLLSYK
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctccagccggaaaccctaatcccaaccccaatcccaacccccccttcgagatg
tccatgctcttcaggccgccgccgcccaaccccgccgcgcccatcttccccgccgtcgcc
ggcccgccgccgccctccggcccctactcctaccccccggccacccctcccttccaccac
ctcccctacccccactacgcgcaggaccccatgccccgcccagtcatgtcctacgccatg
cccaacccaaaccccaaccccaaccccaaccccggggctcgcctcatgcagctgctcggc
aacgccggctcgggccacctcgagtccgcggtctccatgcccccgccctcctccgacttc
accgcctcgcagccgctccagctcccggcgatgccgtccgcgcccccggccaggatgctc
agcaccaccagcagcaaggtgcccaggggccggctcctgggcgccggggacaaggcggtg
cacaacgttgactccaggctgcccggggaggcgcagccgccgcagctcgaggtcacgccc
atcaccaagtacacgtccgacccgggcctcgtgctcggcaggcagatcgccgtcaacagg
acctacatcgtctatgggctcaagatggggaacatccgcgtgctcaacatcaacaccgcc
ctgcgctcactgctacgtggccatacacagagggtcacggacatggctttctttgctgat
gacgtccatcgtttagcaagtgtgagtgtagatggtcggatttatgtctggaggattgac
gagggacatgacgaagaaaataaaccacaaatttcaggcaagatagaagtcgccatacag
attgtaggtgatgccgaagcgtaccatccaaggatctgttggcactctcataagcaagaa
cttctgtttgttggaatcagaaactatgtcttaagaatagacacgactaaagtgggaaag
ggaagagactttaatacggaagaacctattaaatgtcatcttgacgagctgattgatggt
gtacgcttagttggtaagcatgatggtgacgtgacagatttgtccatatctcagtggatg
accacccgactggcttcaggatcaaaagatggcacggtaaagatttgggatgatcgcaag
ccagtgcctttgtcgatcctgaagccacatgatggtcaagctgtttactcagttgccttt
cttacagcacctgagcgcccacatcatataaatcttatcacggcaggtcccctaaaccga
gaaattagaatttgggcttctactaatgaagaaggctggttgtttccaagcgaatctgag
acttggaattgcacccagactttggaacttgttagttctctggaacctaaggccgaggat
gcatttttcaaccaagtcgcagtgctgcctcaagcaaacattattttacttgcgaatgct
aagaagaatgctatttacgctgtgcatgttgagtatggcctggatcctgcttctacccgc
ttggattatattgcagattttacagttgcgatgcctattctgagtctcactggcacacat
gaaagccaacctgatggtgaacaggtagttcaagtctattgtgtgcaaacaatggccatc
cagcagtatgggctggagttatcactttgttcgcctcctacatctgatactactggactt
ggaagagacccagctatttcccgtgttcacgatacacctctggaagtggcaggagcagag
tcatccacaggaactagctttactgattcttatactgttggtgcatcgagtaaacaatcg
actattgatcagactacagaatttgatcataaaccatcagctccaccacttgcacacaca
ggtgatggttctgcgcatcttccgtctgcccctcttgcagcaaacatggatcttactgga
tcaggaccatcactaggcaatcgtgacaaagaccaatcagcattggatcatcagacaaac
cgaagcactgagccggttgcgttgattaggcaagatacaccaatgccaaaaccacttccc
ttgactagacaagatacacccatgccaaaggacagttttgggaaggatgaatatagagac
agtcacagtgatgttaaaatgcttccaaatcctcgtatgatgtttaaggtaggaggcaat
gccactcatctcataactccatctgaaattatatcaggtgctctatctactgctgaaagc
aatcaggtctctaaatctgatggcgcaaaaatccaggatggctctgttagtagccctcgg
attacagaagtggaagcaaaacatgtcgatgagagtaaatctggtcaggaacttgaagct
atcaaggaagctcaagctgtttgtgaaagctcagagaaagcacaaaatttgtttgagcaa
actgttgaaatggtaagtgagcgttcagtaacaactgataagtatagtgttgaagaatca
cagccatcattggatagactggttcctgaccatactggtgctgctggagaaaatgttctg
aacaaaagtgtggaaatgcctggcagaagtgataactcctctgtgtctagggaccaatca
tctgccaaggagaaggttcttcatcttcaagcatctggtcaatcatcaccttctgcaagt
gcatttaactcaactgagtcttcacatgaacctgtcagcagtgcataccctcctattgat
tcatcttcagaagtagctgatatgcaaagtatgcttcaacagctaataatcatgcagaag
gacatgcagaaacagctaagtactgtcgttattgctcccattgcaaaggaaggtaaaaga
attgagacgtcgctaggccgtaccatggagaaatctatcaaggctaacatggatgccttg
tcggctcgtttcctggaggagaacaccaaacgtgaaaaggcagaaagggaacgaatgcag
caaatgaccactctcatctcaagctcaatcagcaaggaccttcccgctatgttggagaag
tcacttaagaaagaagtttcttcacttggacctgttgttgcacggacaatgacacctatt
attgagaagtccttgggctctataattgctgattcagttcagaaagcggtgggtgacaag
gtggtcaatcagctggacaagtctgttactgcaaaacttgaagctacagttgctaggcaa
atccaattgcaatttcatacatctgtaaagcagattcttcaggatgtgttacgcaccagc
tttgaatcattgcttgttccagcatttgaacaatcctgtaagacaatgtttgagcaggtg
gatagtgcatttcagaaaggaatgtccgagcacgctgttgctattcagcagcaggtcgag
gcagcacatactccattggtgctcaccttaaaggaaactatcacttctgcgtcgtcaatc
acccagagtcttacatcagagttacttgatggccatcgcaaactattggcactggttaca
tctgggaacgccagtgcgcaaaatacgaatgttttgcagcccaacaatggccctatcact
ggtcccccagaggttgaggctccattggatccgatgaaggagctgggaagactgatatct
gaacgcaaatttgatgaggcttttacagtggcgcttcaaagaagtgacgtgtcaattgtg
tcttggttatgctctcaggttgatttgcgtgggttatgtacgatggccccacttcctcta
aaccagggagttcttctagccctactacagcagctagcagttgatatttacactgagtca
tcccggaaaatccaatggatgacagatgttgctatggcaatcaatccgacagaccaagtc
atcgccgcacacgtgaggcctatctttgagcaagtctacgccaaattggctcaccaccgg
acactccccagcaccaatccagcagatatcagcaatctccgcttgctcatgcatgtcatt
aactcagttctgcttagctataagtga
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