Lolium perenne (perennial ryegrass): 127306929
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Entry
127306929 CDS
T08650
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 homolog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
lper
Lolium perenne (perennial ryegrass)
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lper03036
]
127306929
Chromosome and associated proteins [BR:
lper03036
]
Eukaryotic type
Meiosis-specific proteins
Others
127306929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
127306929
NCBI-ProteinID:
XP_051193589
LinkDB
All DBs
Position
6:complement(172176553..172184945)
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AA seq
1734 aa
AA seq
DB search
MRTCFLATDYFSPSPAAASSPDQALSLAALRFPPLPVPSLPPDPQFRFPIPFPAVADLPA
ASIPGDDLDSLPVSSALSAFLAAVIPQVRPAPTIPAPAADDDELGCFAQGLLDDYIYGRG
VYGSKGFSARASAASKTPDGSAGDGEGTISDRPVTSADTEGWDLLKELQFEVAEVDLPQM
LEEHVASSVGDESSGGGVTVRFRVPDVKIRLDIIQTDTEMTLRYPTELADSIYQVEKIPV
KHNDEADHFSATNVNLSEIAAFDCGAKIPQLEVCRNSWELDECPTKAEISSIFHNLVEHL
SEAQVQHSAFKSTEFSRPIDIDMLALVAKDAPSADYQVDEPTTVRDAVEMDLVRINGNIL
VDRNSALYPLKPDGTCSDLPCSMLLEEVQIIDFPSDDVSKTLVQSETAELSTSDEIFKDD
FDPARRFYESVVSSELVLVDDAFISLPTPILTDDDMTLRSMIPSMGEVLGSLKPHSLSSA
DGIYLDWHLLLESPCNREICSTYASMVEEVKSCHSNSELQVSCQETSAPSFDFLEYFWRS
AKNQDEDKQKNIYVPAHDDPPAVVETAQKYRQEFDTGGHSHMEKLSSKKPASLFESKSQS
NDLNFYLNVRSGTKRGANEYSVSTLDIPTLKEQAAPSSTMPKVEKLIEIHPVSLSDSIRV
LIKHIHISYTSALQESASLRHTFSDGHGLSISKQKLLGLITGEGSDGFYNHCKYEDKMEL
MVLYGLKQVAYYLCFFGLHAAHMYISNLIGSFENIPERLRHVHCLIGEARWKAEKHQFDS
HPSLFDIEKILRSNTRTNQKILIVADRAFWVPLGHKLTSLKMTFGELGKDPDAAYLDQVN
KANSKTSVLGGLAKSDCILLDNKDIPASFPFSEFGIVLEYGGPNKSSTLLSLAPKLDGFP
PLHFLYVKVDTEDSSIALVEDNPTEQDLKATLDTVLHTLQKDLQEKMNKMRIVDSLNFIP
ATNPLQGLQENLVKHLTADSTISFPADDQQLKLENLEKKNTADAPNFVPVAEQRPQEEIL
SKRDILDPQNFVPAVDKSSSTSSVSANVMKAPQDNLSATDLPSSVKVGSILSGRLSTPEA
VIVVNTGSHGKSMLFSRRSSYQQILSLEKGGMQVVERDIDLPVDLILSASDCLVWCETKL
FGCSEFSMPTETSSITNFVETIATNILMSISFCFSGCIMVFEGEPHSLAAVMESSDSLYA
AAASLVMNLQLFFSHTPKSTDEIILSCIRKVARLNRAPLDIPESESLAESFLTKFPSINP
LSAYIILSSGGSLVEFLSWSHERRIQAVGEHLLSPQSISLFSALCKFGELGESRSVMTEC
SSVDSDICSALLQSPRKRRKCAPQAFAVPTSDPLCLDPLNQLPGDYVEHDNVFSPPKLRR
FSDMEDATPHLREAFMFDQSLSRGGEGVSCLPRKHGVDAMIHSQIMGDPFSNELSRDTRT
YDRRASGMVDTHDFSWQPEFRGKEPMKSSYPASEPSFSRTYSHPVFPTALEINDDTGDWD
FSAGTHHTLKGHVHGDTSTLSRRYDDVGSRYHEPREEMMQSQGGSLDFLKQDVGSHAASH
GSGWEIDYLRQMNENRKARQERSSGMMSNSRMRDGASEIRSPPSIESFRYRGDRDTPSRG
RSLTIGTRYRGDRDTPSRDRSPPAGTHRYGKAREGTKAHTQGARKYFKVQPSASQERRIQ
PSIDPSWTPVDKRARQKLSFATDGKEKQSKLIWRNQNSPGIGCGFRKRYREEGT
NT seq
5205 nt
NT seq
+upstream
nt +downstream
nt
atgcggacctgcttcctcgccaccgactacttctcgccgtcgccggcggcggcctcctcc
ccggaccaagccctatccctagcggccctgcgcttcccccctctccccgtcccgtccctc
cctcccgacccccaattccgcttccccatcccgttccccgccgtggccgacctccccgca
gccagcatccccggcgacgacctcgactcgctccccgtatcctccgcgctatccgcgttc
ctcgccgccgtcatcccgcaggtccggcccgcgccaaccatccccgcccccgccgccgac
gacgacgagcttgggtgcttcgcgcagggattgctggatgactacatctacggcaggggc
gtgtacggcagcaaggggtttagcgcgagggcgtctgctgcatccaaaacccccgatggg
tctgctggggacggagagggaaccatatcagacagaccggtgacctccgccgacacggag
ggatgggacctgctgaaggagctccagttcgaggtggcagaggtcgatctccctcagatg
ctggaagaacacgttgcttcctccgttggcgacgagtcgtcgggtggtggtgtcaccgta
cggttccgcgttccagacgtcaaaatccgcctggatatcattcaaactgacactgagatg
actttaagatatccaactgaacttgcggactcaatttatcaagtagaaaaaatccctgtg
aagcataatgatgaggcagaccatttctctgcaacaaatgttaacttgtcagagattgca
gcatttgattgtggtgcaaaaataccacaattggaggtttgtaggaattcctgggagctt
gatgagtgcccaaccaaggcagagatatccagtatttttcataaccttgttgagcacttg
agtgaagcacaggttcagcattcagcgtttaaatcaacagagttctcgagaccaattgat
attgatatgctggccttggttgccaaagatgcaccatctgcagactatcaagtagatgaa
ccaacaacagtcagggatgcagtagaaatggatcttgtgaggatcaatggtaatattctg
gtggacagaaactcagcattataccctctcaagcctgatgggacttgctcagacttgccg
tgctcaatgttgttagaagaagtccagatcattgattttccttcagatgatgtctccaaa
acgcttgttcagtcagagacagctgagctgagtacatctgatgaaatattcaaagacgac
tttgatccagcaagacgtttctatgaatcagtggttagctctgagttggtactggttgac
gatgcattcatatcattgcctacacctattttaactgatgatgatatgaccctgagatct
atgattccctccatgggagaagtactcggctctctgaaaccacattctctctcttcagct
gacggaatttatttggactggcatcttctattggaaagtccatgcaaccgggagatctgc
tctacttatgcaagcatggttgaggaggtaaaaagttgccattcaaattctgagctgcaa
gtcagttgccaggagacatcagcacccagctttgattttcttgagtatttttggagaagt
gcaaagaaccaagatgaggacaagcagaaaaatatttatgttccagcccatgatgatcca
cctgctgtagtggaaacagctcagaaatacagacaagaatttgatactggaggccacagc
cacatggaaaagttgagttcaaaaaagccagcttccttattcgagtcaaagtcgcaatcg
aatgacctgaacttctacttgaatgtcagaagcggcaccaagagaggagctaatgagtac
agtgtttctactttagatatccccactttgaaagagcaagcagctccttcttcaaccatg
cctaaagttgaaaagctcatagaaattcatcctgtcagcctctcagattctattcgagtc
cttattaaacacatccatataagttatacttctgctttgcaagaaagtgcatctttgagg
catactttctccgatgggcatggtttaagcatttcgaagcagaaacttcttggactgata
actggagaaggttcagatggcttctataatcactgtaaatacgaagataagatggaactc
atggtactgtatggactaaaacaggttgcatactacctctgtttctttggtttgcatgct
gcccatatgtacataagcaacctgattggaagttttgaaaatattcctgagaggttaagg
catgttcattgtctcatcggtgaagcacggtggaaagccgagaagcaccagtttgactcc
catccatcattatttgacattgagaaaatcctcagatctaatactcggacaaaccaaaag
atccttatagttgccgacagagctttctgggtgccattgggtcataaattaacttcactg
aagatgacatttggtgaactaggaaaagaccctgatgcagcttatctagatcaggtgaac
aaggcgaattctaaaacttcggtgctgggaggattagcgaaatcagactgcattctgcta
gataacaaggacattccagcttcattccctttcagtgagtttggcatcgtactggaatat
gggggtccaaataaatcatctactttgttgtctctggctcctaaattagatggttttcca
ccactgcatttcctctatgtcaaagtggatactgaagactcttcgattgcacttgtggag
gacaatcctacagagcaagatttgaaagccacattggatacagttttgcatacacttcag
aaggatctgcaagagaagatgaacaaaatgcgtattgttgattcgttgaacttcatacca
gcaactaatccactgcaaggactgcaggaaaatctagtcaaacatctcactgctgattca
acaataagcttcccggcagatgatcaacagctcaaactagaaaatctggagaaaaagaat
actgctgatgcacctaattttgtgcctgtagctgaacagcggccccaagaggaaattttg
agcaaaagagatattcttgatccacaaaattttgtgcctgcagttgacaagagcagctct
acttcttccgtgtctgcaaatgtgatgaaagccccgcaagacaatctatctgctactgac
ttgccttccagtgtaaaagttggcagcatcttatcaggaagattgtctaccccagaggcg
gtgattgttgtaaatactggaagtcatggaaagagtatgcttttctcccgtagatcatct
tatcagcagatactatctttggagaaaggaggaatgcaggttgtggaacgagacattgat
cttcctgtggacctaatactcagtgcttcagattgcttagtatggtgtgagaccaaactc
tttgggtgcagtgaattctcaatgccaactgagacatctagtataacaaattttgtagag
accattgcgaccaatattctgatgtcaattagcttctgtttcagtggctgcataatggtc
tttgaaggagaacctcactcccttgctgctgtaatggaatcatccgattctctatatgct
gcagctgctagtctggtcatgaacttgcagctattcttctcacacactcccaagtcaaca
gatgagataattcttagttgcatcagaaaggtggctaggttaaatagagctcctctagat
atacctgaatcagaaagcttagctgaatcatttctcacaaaatttccttcaatcaacccc
ttgtctgcatacataatactttcttctggaggcagcctcgtggagttcctcagttggtca
catgagcgtcgcattcaggctgttggagagcatctgttgtctccacagagcatttctctg
ttcagtgctttatgcaaatttggtgagctaggtgaatctaggtctgtaatgaccgaatgc
tcttctgtagattcagacatctgcagtgcattgctgcagtctccaaggaagaggagaaag
tgtgccccacaagcttttgcagtaccaactagtgatcctctatgtctcgatcctctaaac
caattgcctggtgactatgtagaacatgacaatgtattctcaccgcccaagttgaggagg
ttctctgacatggaggatgcaacacctcacctccgagaggccttcatgttcgaccaaagt
ttgagtaggggaggcgagggtgtctcttgtcttccaagaaagcatggcgttgatgcaatg
attcacagtcagataatgggtgatcctttcagcaatgaattgagtagagatacgaggaca
tatgatagaagggccagcggtatggttgacacacacgacttctcttggcagcctgaattc
cggggtaaagaaccaatgaaaagctcttatcctgcaagcgaaccatcattcagcagaact
tacagccatccagtatttcccactgcattggagatcaacgacgatactggtgactgggac
ttctcagcaggtacacatcacactttgaagggtcatgtacatggtgatacttccacactc
tctcgcagatatgacgatgtgggcagcagataccatgaaccacgagaggaaatgatgcag
agtcaagggggctcgcttgattttctgaaacaggatgttggctctcatgcggcttcacat
ggttcaggctgggaaatcgattatctaaggcaaatgaacgagaataggaaagcacgccag
gagagatcatcaggaatgatgtcaaactcgagaatgagggatggagcctctgagattcga
agtcctccatcaattgaatccttcagataccgaggagacagggatactccttcgaggggg
cggagccttactattgggactagataccgaggagatagagatactccttcaagggaccgg
agccctcctgctgggactcaccgttatgggaaggccagagaaggaactaaagcacatacc
cagggggccagaaaatatttcaaggtgcagccaagtgcaagtcaggaacgcaggatacag
ccgtccatcgacccatcatggactccagttgacaaaagagcgagacagaaactttcgttt
gcaacagacgggaaggaaaaacaaagcaagctgatctggagaaaccagaacagccctggt
atcgggtgcggcttccggaaaagataccgggaggaaggtacgtag
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integrated database retrieval system
