Lolium perenne (perennial ryegrass): 127308216
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Entry
127308216 CDS
T08650
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127308216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127308216
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127308216
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
127308216
mRNA degradation factors
3'-5' decay
Ski complex
127308216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
127308216
NCBI-ProteinID:
XP_051194933
LinkDB
All DBs
Position
6:complement(42680468..42694393)
Genome browser
AA seq
1366 aa
AA seq
DB search
MDDLTASPASEVPFRISFSGHGGHLRLDPTPCPPSPVPDFVLPPAYPPESPSSVKEYLEE
NYLNPELYIPTAANDARVWDVDWFDLARPPLEPSAPRTMLVPAWEPPFRRRPSTSPQVWD
PKSVQMEMSQVFDSGTGGMVPRMPGPAKDFVRGRVNSRPFRPGGLQDDAAEAAALEKAFP
ESARNGDWVRELMSGGPALTAPPGFPKGIDLGQLKEYNSHWKCFRDGEQVEEQPASSSND
TMDKYSVQFDDLFKISWEEDDANIVPREDDGEHLARDEGTNDINEQKVDKLQDGSETLAR
ADTDKHEVNVIGDASEAQMDLDKMLSSEVQDTRRETSGLGDDKPAQEGTDWALVVGDDGI
MTNFHKLVPDMAIEYPFELDKFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALATKH
CTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSIRPEATCLIMTTEILRSMLYRGADI
IRDIEWVIFDEVHYVNDAERGVVWEEVIIMLPKHINIVLLSATVPNTVEFADWIGRTKQK
KIRVTATNKRPVPLEHCLFYSGEVYKVCEKDIFLTQGFREAKDAFKIKNSNKFGAKPGTK
SGTPAVRSGTQGRNPDTSNKGRDQKHSKHHHTNSGAAAIQQSTSGPRRSDLIWMPLINNL
LKKSLVPVVIFCFSKNRCDRSAESMFAADLTSTSDKSEIRVFCDKAFSRLKGSDRNLPQV
VGIQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTL
RKFDGKEHRKLLPGEYIQMAGRAGRRGLDTIGTVIMMCRDEIPEESDLKNLIVGKPTRLE
SQFRLTYTMILHLLRVEELKVEDMLKRSFAEFHAQKDLPQKEKLLLQMLRQPTKTIECIK
GEPSIEEYYDMFLEAEEHREFVTEAIMQLPTTQQFLAPGRLLVVKSKTDDDHCLGVIVKN
PSAALKQYVVLVLTGDSTSSALDPNLSNQNDKGTGVSQQGYLVIPPKGKRGMEEDFFSSG
RTRKSSGVINIKLPYTGDASGMGFEVRAVENKEIISICTSKIKIDQVGLLEDISKTSYTK
TVQMLIKEQSDGKYPPALDAIKDLKMKEMDKVQRYHAHVNLLEQMSENKCHGCVKLKEHK
LLMKEQKVYKDQLDQLKYQMSDDALQQMPQFQGRIDVLKEIHYIDSDLVVQLKGRVSCEM
NSGEELITTECLFENQLEDLEPEEAVAIMSAFVFQQRNASEPSLTPKLADAKKRLYDTAI
RLGQLQKRHEVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVSEGLIVRTIVR
LDETCREFRNAASIMGNSALFKKMEIASNAIKRDIVFAASLYVTGI
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggacgacctcaccgcgtcgccggcgagcgaggtgccgttccgcatcagcttctccggc
cacggcggccacctccgcctcgaccctaccccctgcccgcccagccctgtgcccgacttc
gtcctgccgccggcctacccgccggagagtccgagcagcgtgaaggagtatctcgaggag
aattacctcaaccccgagctctacatccccaccgcggccaatgacgccagggtgtgggat
gtggactggttcgatctggccaggccgcctctggagccctccgccccgcgcaccatgctc
gtccccgcctgggagccgcctttccgccgacgaccgtcaacgtcgccgcaagtttgggac
cccaagtctgtgcagatggagatgagccaagtgttcgactcggggactggggggatggtg
ccgcggatgcctggaccggccaaggactttgtgagggggagggtgaatagtcggccattc
cgtcccgggggcctgcaagacgacgcggccgaggcggcagcgttggagaaggcattcccg
gagagtgcgcgaaatggcgattgggtgcgtgagcttatgagtggtggcccggctctaacc
gctcctccgggtttccccaagggaatagacttgggccagttgaaggagtataacagccat
tggaagtgtttccgagatggggagcaggtcgaggagcaacctgcatcttcgtcaaatgac
acgatggataagtactctgtgcagtttgatgatttgttcaagatatcttgggaggaagat
gatgccaatattgtgccgcgtgaagatgatggcgagcacttggctagagatgagggaacc
aatgatatcaacgaacaaaaagttgataagttgcaagatggttctgaaactcttgcacgg
gcagacactgacaaacatgaagttaatgtcattggagatgcttctgaagctcaaatggac
ttggataaaatgttatcatccgaagtgcaagatactcgaagagaaacaagtggattaggt
gatgataagccagcgcaggaaggcacggattgggcgcttgttgttggggatgatggcatt
atgactaacttccacaaacttgttcctgatatggcaatcgaatatccctttgagttagat
aagttccagaaggaggctatatattatcttgagaagggggaatcagtctttgtggcagcc
catacatcagcaggaaagacagttgttgcagagtatgcctttgctttagcaacaaaacat
tgcaccagggctgtctataccgctcccattaaaactatcagcaaccaaaaataccgagat
ttctgcgggaagtttgatgtgggacttcttactggagatgttagcatcagaccagaggca
acttgcttaattatgacaacagaaatattacgctcaatgctctacagaggtgctgatatt
atacgggatattgaatgggtaatttttgatgaagtacattatgtcaatgatgccgagaga
ggtgtagtttgggaggaagttattataatgctcccgaagcacattaacattgtcctcctt
tcagcaacggttcctaatacagttgaatttgctgactggattggccgaacaaaacagaag
aaaatccgtgtcacagcgactaacaaaaggcctgtccccctggagcattgcctgttctac
tctggagaggtatacaaagtatgtgagaaggatatatttcttactcaaggatttagagaa
gccaaggacgctttcaaaataaaaaattcaaataagttcggagcgaaacctggtacaaaa
tcaggaactcctgcggtacgttctggaactcaaggcagaaatccagacacgtctaataaa
gggagagatcagaagcactcaaagcaccaccataccaattcaggagcagccgcaattcag
caaagcacctcaggaccaaggagatcagatttaatctggatgccgcttataaataatctt
ctgaagaaatcacttgtgcctgtggtaatcttttgcttctcaaagaacaggtgtgataga
tcagcggagagcatgtttgctgctgatctcaccagtacttcggataaaagcgaaatccgt
gtcttttgtgataaggccttttcacgcctcaaaggatctgacaggaaccttcctcaggtt
gtaggaatacaaagccttctacgaagaggaattggagttcaccatgctgggcttcttcct
attgtgaaagaagtagttgagatgctgttttgtcgtggtgtgattaaggtactgttctcc
accgagacatttgcaatgggtgttaatgctccagcaagaactgttgtatttgatacctta
agaaagtttgatggaaaggaacatcgaaagttgcttccaggggagtatattcaaatggct
ggacgagctggtaggagaggacttgacaccataggtacagtgataatgatgtgtcgtgat
gaaattcctgaagaaagtgatttgaaaaatcttattgttggaaaaccaactcggctggaa
tctcagtttcgactgacatacactatgatactacatcttctacgtgtggaggaacttaag
gtagaggacatgcttaagagaagtttcgcagaattccatgcacagaaggatttgcctcag
aaggaaaagctacttctgcaaatgctgcgtcaacctacaaagacaatcgagtgcataaaa
ggagagccttctattgaagaatattacgatatgtttttagaagctgaagaacacagagag
tttgttacagaagcaattatgcagttgcctactacacagcagttccttgcgcctggaaga
ctactggttgttaaatccaaaactgatgatgatcactgtcttggtgtaatcgtgaaaaat
ccatccgccgcactaaagcagtatgttgtacttgtactgaccggcgactccacttcatct
gcactagaccctaatttatccaatcaaaatgataagggaacaggggtttctcaacaagga
tatcttgttatcccaccaaaaggaaaacgtggaatggaagaagattttttctcttccggt
agaacacgaaaaagttcaggtgttatcaatatcaagctaccatacacgggtgacgcatct
ggaatgggttttgaagtaagagctgtggagaacaaagagattattagtatatgtacaagc
aaaataaagatcgatcaagtcggactccttgaagacatcagcaaaacatcttacactaaa
actgttcaaatgcttattaaagagcagtcagatggaaagtaccctcctgcactagatgca
ataaaagatctaaaaatgaaagaaatggataaagttcaaagataccatgcacacgtcaac
ctactggaacaaatgtctgagaacaagtgccatggttgtgtaaaattaaaggagcataag
ttattgatgaaggagcaaaaggtctacaaggatcagctggatcaactgaaataccaaatg
tcagatgatgcacttcagcagatgccacagtttcaaggcagaatcgatgtactgaaggag
atccattacattgattctgatcttgttgtgcaacttaagggccgagtatcatgtgaaatg
aactctggtgaggagttaataacaacagaatgtttattcgagaatcagttggaggacttg
gaacctgaagaagctgtggctattatgtctgcattcgttttccaacaacggaatgcatca
gaaccatctctcactccgaaactggctgatgccaaaaagaggctctatgacacggcaatc
aggttaggacaactccaaaaaaggcatgaggtgcccgtggatcctgaggagtatgcacgc
gataatctcaagtttggtcttgttgaggttgtctacgaatgggcgaagggaacacctttt
gcggacatatgtgagctgacagatgtatctgaagggctgattgtaagaacaattgtgcgg
ctggatgaaacatgtagggagttcaggaatgcagcatccataatggggaactctgcgctg
ttcaagaaaatggagatagcttccaatgccattaagcgcgacattgtcttcgcagcaagt
ttgtatgtcacaggaatatga
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