Lolium perenne (perennial ryegrass): 127308404
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Entry
127308404 CDS
T08650
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127308404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127308404
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
127308404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_16
TPR_14
TPR_11
TPR_8
TPR_19
TPR_CcmH_CycH
TPR_9
TPR_7
TPR_12
TPR_MalT
BTAD
ARM_TT21_C
TPR_15
Motif
Other DBs
NCBI-GeneID:
127308404
NCBI-ProteinID:
XP_051195169
LinkDB
All DBs
Position
1:complement(154025411..154033545)
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AA seq
1154 aa
AA seq
DB search
MSAPTAKRGAGEEEAERLLAAAKLNPNDGGPFRALGHHYARAGDAQRAARCFQRAVALDP
DDAQAGEALCDLLDVDGKESLELAVCKDAAGKSPRAFWAFRRLGYLQVHQNKWSEAIQSL
QHSIRGYPTCADLWEALGLAYHRLGMFTAAAKSYGRAIELDSSRVFALIESGNIQLMLGY
FRKGVEQFRLALELAPHNHSAYFGLASALLAWSRHCVATGAFTWAANLLKEASEAAKACS
SLTGNLSCVWKLHADTQLALARCFPWEHGDIKWGMDEHTFKASVLEWRSTCLSAANGAKL
SYQRALHLTPWEANIHIDTAACLDLICTMEENNSVDPITWELPEKMSLGGLMLEPVNKDF
WVTLGLVSSNQALKQHSLIRALHLDMSLSEAWAYLGKIYRQSGHKQLARQTFDRARSIDP
SLALPWAGMSAEDHNQYGAGAVNESYESCLRAVQILPLPEFQIGLGTIAARSGELLSPQV
LMAVRQAVQRAPHYPESHNISGLVAEVRSDFQSAIASYQQAKFALDMMCRSKLDNRYPFV
DVSLNLARSLCKAGLATDAARECEELKTKGLLNVDGLQSYAFALWKLGRHDEALSVSRNL
AENLPSMKQESATGALGFICTLAYNITGKDSAALVIHTLPGQPSYNRELKFIISALDALQ
PTKRFQLPQLSTPPRLTSYEVMSEVHSNIALGKAIGGESNSCLGVEGGLSYLKKVLHMYP
DCSLLRNHLGSLLLSGGDWTASHKAVRVTSLSHGHTSNRGLRSPHQIQASATVSCYATCT
SYPKFSFPTCEDQYLSQYNALCNLQRLVHQEPWNQDARYLLVLAIFQKAREEKYPKHIST
ILKRLILQVLSSRSNSEENKIVLYEKYLLLLLSSEISLQSDDHANCITQATDALRVTSPS
ADAFFAHLQLCRAYVVQGDLSSSRKEYMKCLQNQTNTEIGWVMLKQLESLCSPSPGSDEI
EINLKECIERKGSNPSKWASLFNLACAQSSMRVEDFASAEKALAQACAEKDADSCILFLN
GAMNMEIARRYTAPQYISRAASSLRKAQQKSQATVPIVSLLLAQAEGSLGSKTKWEKNLR
LEWFTWPPELRPAELYFQMHLLASQLTAAAAPQQKQRLLLPETMQSPGAWLLRAIHQNPS
CPRYWKALEQLVYV
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcacccacggcgaagcggggcgcgggggaggaggaggccgagcgcctcctcgcg
gccgccaagctgaacccgaacgacggcgggcccttccgcgccctcggccaccactacgcc
cgcgccggcgacgcgcagcgcgcggccaggtgcttccagcgggccgtggccctcgacccc
gacgacgcccaggctggggaggcgctctgcgatttgcttgatgtggacgggaaggagagc
ttggagcttgctgtgtgcaaggacgctgctggcaagtcgccgcgcgcgttttgggctttc
aggagactcggctacttacaggttcatcaaaacaaatggtcagaggctatacaaagcctt
caacactcaatacgaggttacccgacatgtgctgatttatgggaggcactcggactggct
taccaccgtttgggcatgtttactgctgcagcaaagtcgtatgggcgtgctattgaactc
gatagttccagggtatttgcgttgattgaaagtggaaacatccagctgatgcttggttat
ttcagaaagggagttgaacagtttcgtttagctttggagttggctcctcataatcattct
gcatactttgggcttgcttctgcattgcttgcttggtcaaggcattgtgtagctactggg
gcgtttacctgggcagctaatctgttaaaggaagcatcagaagctgctaaagcttgttct
tccttgactggaaatctttcctgtgtttggaaattgcacgcagacactcagcttgcactt
gcaagatgctttccgtgggagcatggggatatcaagtggggcatggatgaacatactttc
aaagcttctgtccttgagtggagaagtacatgcttgtcagctgcaaatggtgcaaaactc
tcatatcaacgagctttgcatctcacaccttgggaagctaatattcacattgatactgct
gcttgtcttgatctcatttgtaccatggaggagaataactctgtagacccgataacttgg
gagcttccagagaaaatgtcattgggtggtttgatgttggaaccagttaataaggatttc
tgggtcacattgggtttagtgtcaagtaatcaggctttaaagcaacattctcttatcagg
gcactgcatttggatatgtctctctctgaagcttgggcataccttggaaagatttacaga
caatcaggtcacaagcaattagcaagacaaacatttgaccgagctcgaagcattgatcct
tcattggccttgccatgggcaggaatgtcggcagaagatcataaccaatatggggctggt
gcagtaaacgagtcttatgaaagctgcttgagagctgtgcagatactacctctgccagag
ttccagattggccttggaactattgctgctcgttctggtgaacttctgtcacctcaggta
ttgatggctgtaagacaggctgttcagcgagcgcctcattacccggagtcacacaatata
agtggattggttgctgaagtccgatcagactttcaatctgcaatcgcatcttaccaacag
gcgaaatttgctttagacatgatgtgcaggtccaagttagacaacagatatccttttgtt
gatgtttcgctgaatcttgcccggtcactttgtaaggctggtcttgcaactgatgcagca
cgggagtgcgaagagttgaaaacaaaagggttgctgaacgttgatggattacagtcatat
gcttttgcattgtggaaacttggacggcatgacgaagctctctctgtatcaagaaacttg
gctgagaatttacctagtatgaagcaggagagtgcaactggagcattgggattcatatgc
accttggcatacaacatcaccgggaaggattctgcagctttagtcattcatacactccct
ggtcaacccagttataacagagagttgaaattcatcatctctgcattagatgctttgcag
ccaactaagcgttttcagttacctcaattgagtacgcctcctagacttacatcctatgag
gtgatgagtgaagtccactcaaatattgctctggggaaggcaattggtggggaatcaaac
agctgtttaggggtcgagggtggtttgtcttacctgaaaaaggttctgcacatgtatcct
gattgcagtttactaagaaaccatcttggatcgctgctgctgtccggtggagattggact
gcttctcacaaagcagtaagggttacttcattgtcccatgggcacacatccaatagaggc
ctaaggtccccgcatcaaattcaagcatctgcaacagtgtcttgctatgctacctgcact
tcttatccaaagttctcattcccaacatgtgaagatcagtacttgagtcaatacaatgca
ctatgcaacctgcaaaggttggttcatcaggaaccatggaaccaagatgcacggtacctg
cttgtacttgctattttccaaaaagcacgtgaagagaagtaccccaaacacattagtacc
atcttgaagaggttgattctacaagtactgtccagcagaagcaattcagaagagaataaa
atcgtcctttatgagaagtacttgctactcctactgtcttcagagattagtttgcaatct
gatgaccatgcaaactgcatcactcaagctacagatgctctaagagttacttcgccaagt
gcggatgctttctttgcacacttgcaactgtgtcgggcttatgtggtgcaaggtgatctt
tcaagctccaggaaggagtacatgaagtgcttgcagaaccagacaaatactgagattggc
tgggtaatgctgaagcaactagagtctctatgttcaccgagccctggctctgatgaaata
gagataaatctcaaagagtgcattgagaggaagggtagcaacccatcaaaatgggcatct
ctttttaatctagcatgtgctcagtcctctatgcgggttgaggactttgcaagtgctgaa
aaagctcttgcacaggcttgtgctgaaaaggatgctgatagctgcatcttatttctcaat
ggagcgatgaatatggaaattgcccggaggtatacggctcctcaatatataagccgtgca
gcttccagcctcagaaaggcacagcagaaatctcaagctaccgtacccatcgtatcgctc
ctactggcccaagcagaaggcagccttggctccaaaaccaaatgggagaaaaaccttcgc
ctcgaatggttcacatggcccccagaactgcggcctgcggagctctacttccaaatgcat
ctgctggcgagccagttgactgcggcggcagctcctcagcagaagcagcggttgctgctg
ccggagacgatgcagagccctggtgcgtggcttctcagagcgatacaccagaacccgtcg
tgccccaggtactggaaggccttggagcagcttgtgtacgtgtaa
DBGET
integrated database retrieval system
