Lolium perenne (perennial ryegrass): 127308609
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Entry
127308609 CDS
T08650
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03022
Basal transcription factors
lper03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127308609
09124 Replication and repair
03420 Nucleotide excision repair
127308609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lper03021
]
127308609
03400 DNA repair and recombination proteins [BR:
lper03400
]
127308609
Transcription machinery [BR:
lper03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127308609
DNA repair and recombination proteins [BR:
lper03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127308609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
127308609
NCBI-ProteinID:
XP_051195434
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Position
6:complement(23499890..23504555)
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AA seq
291 aa
AA seq
DB search
MTTTHSKLYADDVSLVVVVVDTNPFFWAGAALPFADFFSHLIHFVNSLLLLNHLNHVVVI
AAGVSSCAYVFDSSNAGASGAADVAATLDKASRKVEEFIKQDARETASNGTVAAGGAASL
FSGALSIALCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSC
IVGTQDSAFLQQASYITGGVYMKPQELSGLFQYLAAVFASDLHSRAFLRLPKTLGVDFRA
SCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFIRVMPDLNSMPDQRQ
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccacgcactccaagctctacgccgatgatgtcagcctcgtcgtggtggtcgtc
gacaccaaccccttcttctgggccggcgccgccctccccttcgccgacttcttctcccac
ctgatccacttcgtgaactcgctcctgctgctgaaccacctcaaccatgtggtcgtcatc
gctgcgggtgtcagctcctgcgcgtatgtcttcgactcgagcaatgccggcgcctccggt
gcggccgacgttgctgccaccttagacaaggcgagccgcaaggtggaggagttcattaag
caagacgcccgtgagactgccagcaatggcacagttgctgctggcggtgccgcgtcgctg
ttttctggcgcattgtccattgctctttgctatatacagaggatttttcggtctggcact
cggcatccgcaacctcggattttgtgcctgcagggttctccagatggacctgaacaatat
gtggcagtgatgaattcaatattttcggcacaacgttccatggttccaattgattcatgt
atcgtggggacccaagactctgctttcttgcagcaggcttcatatataacaggaggagtt
tatatgaagccccaagaactaagtggcctatttcaatatcttgctgctgtatttgcatct
gatttacactcgagagcattcctgcgcctccctaagaccctgggagtggatttccgtgcc
tcatgtttctgccacaagaagactattgacatgggatatgtttgttcagtttgcttgtca
atattctgcaagtaccataagaaatgttcaacttgtgggtcagaattcatccgtgtcatg
cctgatttgaattccatgccagatcaaaggcagtaa
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