Lolium perenne (perennial ryegrass): 127311690
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Entry
127311690 CDS
T08650
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127311690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127311690
03041 Spliceosome [BR:
lper03041
]
127311690
03009 Ribosome biogenesis [BR:
lper03009
]
127311690
03016 Transfer RNA biogenesis [BR:
lper03016
]
127311690
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127311690
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
127311690
Spliceosome [BR:
lper03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127311690
Complex C
U4/U6.U5 tri-SnRNP related factors
127311690
Ribosome biogenesis [BR:
lper03009
]
Eukaryotic type
Pre-60S particles
Helicases
127311690
Transfer RNA biogenesis [BR:
lper03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
127311690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
HHH_8
SPESP1
Motif
Other DBs
NCBI-GeneID:
127311690
NCBI-ProteinID:
XP_051198107
LinkDB
All DBs
Position
7:2132149..2140262
Genome browser
AA seq
999 aa
AA seq
DB search
METLKRKAPDSPTTDAGSPLKAPRADSATPAPAAPAAPSERVACVHDVSYPEGYDASTSG
SRIVAGGGEGAAPAKTFPFPLDPFQSEAIRCLDNGESVMVSAHTSAGKTVVALYAIAMSL
RNQQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKG
SEVMREVAWVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKV
HKQPCHIVYTDYRPTPLQHYVFPAGGDGLYLVVDENGKFREDSFQKSLNVLAPASGGDKK
RDNGKRQKGVMAGKPHEDSDIFKMVKMIIQRQYDPVILFSFSKKECEFLAMQMAKMDLNG
EDEKVNIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQE
GLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYIQMSGRAGRRGIDQRG
ICILMVDEKMEPSTAKMMLKGGADSLNSAFHLSYNMLLNQMRSEDGDPEKLLRHSFYQFQ
ADRALPDLEKQVGELEKERSSMIIENEENVKDYYDLLQQYKSLKMDVRDIVLSPKYVLPF
LQSGRLVRVQYSTDDKPTFSIDENVTWGIIINFEKVKTNGEDRRPEDYDYTVDILTRCSV
NKDISGKKIMKIIPLKSRGEPVVISLPLSQIDGLSSVRMYIPKDLLPVEARENTLRKVEE
VLSRFSKDGVPLLDPEEDMEVKSSSYRKAARRIEALESLLEKHDDIRSAPHIQQKLKVFH
AKQEIASKIKSIKKTIRASTALAFKDELKARKRVLRRLGYITSEDVVEVKGKVACEISSA
DELTLTELMFSGTLKDATVEQMVALLSCFVWQEKLQDAPKPREELDLLFYQLQETARRVA
NLQLECKIQIDVESFVNSFRPDVMEAVYSWARGSKFHQIMEMTQVFEGSLIRAIRRLEEV
LQQLILASQSIGETQLEAKLEEAVSKIKRDIVFAASLYL
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggagacactcaagcggaaggcgccggactcccccaccaccgacgcgggctcccctctc
aaggcgccgcgggccgactccgccacgccggcgcccgccgcccctgccgccccatccgag
cgcgtcgcctgcgtgcacgacgtttcctaccccgaaggctacgacgcgtccacctccggc
tctcgcatcgtcgccggcggcggcgagggcgcggccccggccaagaccttccccttcccg
ctcgaccctttccagtccgaggccatccggtgcctcgacaacggcgagtccgtcatggtc
tcagcgcacacgtcggcggggaagacggtggtggcgctgtacgcgatagccatgtcgctg
cgcaaccagcagcgcgtcatctacacgtcgccgatcaaggccctcagcaaccagaagtac
agggagttcaaggaagagttctccgacgtcggcctcatgaccggagacgtcacgatcgag
ccgaacgcctcttgcttggtcatgaccacggagatttggcgcagcatgcagtacaagggg
tcggaggtcatgcgagaggtcgcttgggttatcttcgacgaggtgcattacatgcgtgac
agggagagaggagtggtgtgggaggagagtattgtcatggctcccaagaactcgcgcttt
gtgttcctctccgcaactgtacctaatgccaaggagtttgctgattgggtagctaaggta
cataagcaaccttgtcatatagtatacaccgactaccgacctacacctctccagcactat
gtgtttcctgctggaggtgatggcttgtacctggtagttgatgagaatggcaagttcaga
gaggacagttttcagaaatctctgaatgttcttgctcctgctagtggcggtgacaagaag
agggacaacgggaagcgacaaaagggcgtcatggcagggaaacctcatgaggacagcgac
atattcaagatggtgaaaatgataattcagcgtcaatatgaccctgtgattcttttcagc
tttagcaaaaaagaatgtgaatttcttgctatgcagatggccaagatggacttgaatggg
gaagatgagaaagtgaacattgaaaccatattctggagtgctatggatttgctttcagat
gatgacaaaaagcttccccaggtttcaaatatgcttcccttattgaaacgcggcattgga
gtgcatcattctggtctgttgcccattctaaaggaagtgattgagatactttttcaagag
ggcctcatcaagtgtctgtttgccacagaaacgttcagtattggattgaacatgcctgca
aagactgttgtgtttaccaatgtacgaaaatttgacggagatcgatttagatggttgtca
agtggagagtacatccaaatgagtggccgtgctggtcgtcgaggtattgatcagcgtggt
atctgcatattgatggtagatgagaaaatggaaccctcaactgccaaaatgatgctgaaa
ggaggtgctgatagtttgaacagtgccttccatttgagctacaacatgttgttaaatcaa
atgcgctctgaggatggcgatccagaaaagcttcttcggcattcattctaccaatttcaa
gcagatcgagctctccctgatcttgagaagcaagtgggggaactggaaaaagagagaagt
tccatgattattgaaaatgaggagaatgtgaaggattattatgatctcttacagcagtac
aaatctttaaagatggatgtccgtgatattgtactttcgccaaaatatgttctgcctttc
ttgcaatctggaaggcttgttcgtgttcaatacagtacagatgacaaacccaccttctct
attgacgaaaatgtcacatggggaattataataaactttgaaaaggtgaaaaccaatggt
gaagacaggaggcctgaggattatgattacactgttgacatcctcaccagatgttctgta
aacaaggacataagtggaaagaagattatgaagattatacctctcaaatcccgtggagaa
ccggttgttatttcgttgccactttctcagatcgatggactaagtagcgttcgaatgtac
atacctaaggatcttttgcctgtagaagctcgagaaaacaccttgcggaaagttgaagaa
gtgctttcaaggttttctaaagatggggttcctctattggatccagaagaagatatggaa
gtgaaatcaagctcctatcggaaagctgccagaagaatagaagctcttgagagcttattg
gagaagcatgatgacatccgtagtgctccccatatccaacagaagctgaaggtgtttcat
gctaagcaagaaatagcatccaaaataaagtccataaagaaaacaatacgtgcttcgact
gctctagctttcaaggatgagctgaaggcccgaaaacgtgttcttcgtaggctgggatac
atcaccagtgaggatgtagttgaagtgaagggcaaagtggcatgtgagatcagctcagct
gatgaactgacattgactgagcttatgttcagtggtactttgaaggatgctactgttgag
cagatggtggctctgctttcttgctttgtttggcaggaaaaacttcaggacgccccaaag
ccgagggaggagctcgacttactcttctaccagttgcaggaaaccgcgcgaagggttgca
aacctccagctcgaatgcaagatccagatcgacgtggaatcttttgtgaactccttccgc
cctgatgtgatggaagctgtgtattcgtgggccagagggtccaagttccaccagatcatg
gagatgacccaggtgttcgaaggcagcctgatcagggccatcaggcggctggaggaggtc
ctgcagcagctgatcctggcatcccagtcgatcggtgagacccagcttgaagcgaaactc
gaggaggcggtcagcaagatcaagagagacattgtgtttgcagcctccttgtacttgtaa
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