Lolium perenne (perennial ryegrass): 127312144
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Entry
127312144 CDS
T08650
Name
(RefSeq) zinc finger CCCH domain-containing protein 45
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127312144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lper03021
]
127312144
03019 Messenger RNA biogenesis [BR:
lper03019
]
127312144
Transcription machinery [BR:
lper03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127312144
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127312144
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_4
zf-CCCH_RBM22
Motif
Other DBs
NCBI-GeneID:
127312144
NCBI-ProteinID:
XP_051198563
LinkDB
All DBs
Position
7:complement(295956777..295961668)
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AA seq
650 aa
AA seq
DB search
MDDGDGGLSFDFEGALDAAPAVGGLGPSSADPGAIGGGGGADGGGHGRGRGRGSYRQTVC
RHWLRGLCMKGDACGFLHQFDKARMPVCRFFRDFGECREADCAYKHSYDDVKECNMYKMG
FCPNGPNCRYKHVKLPGPPPPPEEVVAKLLQMRNFNFNKFNQNRNNNFNHQGERPRPSQG
SGLPNQNLTDNATTTTMQPAAAQQGQTLNQQPPQKLQQKPNTNDPVQGVPSGLSNQTTRP
ATPLPQGTSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNDAFESMENVILIFSINRT
RNFQGCAKMTSRIGGYIGGGNWKSANGTAHYGRNFSLQWLKLCELSFQKTHHLRNPYNDN
LPVKISRDCQELEPFIGEQLASLLYLEPDSELTAMLVAAEAKREEEKAKGVSADDANDNQ
DIVLYDENEEDEEEESEEEEENNGQESQGRGRGRGMMWPPQMPMPRGPMMGGRGFPPNMM
GDGFGFGGGFGMPDPFGMPRGFPPFGGPRFPGDFPRGPMPGMVFPGRPPQPGGLFPMGLE
MMMGPGRGPLMGGMGMGGPGRPNRPIGMAPFMPPPPPRPAKREQRRPGGDRGDRYETGSD
QGSRGHDNNAGNSGADGARSQSGDRYGRSAFRDDDSESDEEAAPRRSRKR
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggcgacggcggcctcagcttcgacttcgagggcgccctcgacgcggccccg
gcggttggcgggctagggccgtcctcggccgaccccggcgctatcggcgggggcggcggc
gcggatggtggcgggcacgggcggggccgcgggcgcgggagctacaggcagacggtgtgc
cggcactggctgcgggggctgtgcatgaagggggacgcgtgcgggttcctgcaccagttc
gacaaggcgcgcatgccggtgtgccgcttcttccgcgacttcggcgagtgtcgcgaggcc
gactgcgcctacaagcactcctacgacgacgtcaaggagtgcaacatgtacaagatggga
ttttgccctaatggcccaaactgccggtacaagcatgtcaagctacctggaccacctcct
cctcctgaggaagttgtcgcaaagcttttgcagatgcgcaatttcaatttcaacaagttt
aatcagaacaggaacaataactttaatcatcagggggagaggcctcgaccttcacaaggt
tcaggcttacctaaccagaatttgacagacaatgctaccactacaacaatgcaaccagct
gctgcgcaacaaggtcaaacactgaatcaacagcccccacagaagctgcagcagaagcca
aatacaaatgacccggttcaaggtgttccaagtggcttgtccaatcaaactaccagacct
gcaacaccccttccacaagggacatctaggtacttcattgttaagagctgcaatagggag
aacctggaaatatcagttcagcaaggcatctgggctactcagaggagtaatgaggctaaa
ctaaatgatgcttttgaatccatggagaatgttattttaatattctcaatcaatagaacc
cgtaattttcagggctgtgcaaagatgacttctaggattggtggctacataggtggtgga
aactggaaatctgctaatggaacagcgcattacggtcggaacttctctttacagtggctg
aagctttgtgaattgtcatttcaaaaaactcatcatcttcgcaacccatacaatgacaat
cttcctgttaagatcagtcgagattgccaagaattggaacctttcattggtgagcagttg
gcttctctgctttatctggagccagacagcgagcttacggctatgctagttgcagcagag
gcaaagagagaagaggagaaggcaaagggagttagtgctgacgatgcaaatgacaatcag
gatattgtgctgtatgatgaaaatgaagaagatgaggaagaggaaagtgaggaggaagag
gaaaacaatggccaagaatctcaaggaaggggaaggggaagaggaatgatgtggccgcct
caaatgccgatgccacgtggaccaatgatgggagggcgtggcttccctcccaacatgatg
ggtgacggctttggttttggcggcggctttggtatgccggatccttttggcatgccacgc
ggtttcccaccgtttggtggcccaaggtttcctggcgacttccccagaggtcctatgcct
ggcatggtcttccctggaaggcctccgcagcccggtggcctcttccccatgggccttgag
atgatgatgggcccaggccgcggaccactcatgggaggcatgggaatgggcgggcctggg
aggccaaaccgccccatcggcatggctcccttcatgccgccgccacctcctcgtcccgcg
aaacgggagcagagaaggccaggcggtgacaggggcgacaggtatgagacagggtcagac
cagggaagcaggggccatgacaacaacgctggtaattctggagcggatggtgccaggtcc
cagtctggggacaggtacggcaggagcgccttccgagacgacgacagtgagagtgatgag
gaagcagcacctaggcgatcaaggaagcgatag
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