Lolium perenne (perennial ryegrass): 127312201
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Entry
127312201 CDS
T08650
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03013
Nucleocytoplasmic transport
lper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127312201
09122 Translation
03013 Nucleocytoplasmic transport
127312201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127312201
03041 Spliceosome [BR:
lper03041
]
127312201
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
127312201
Spliceosome [BR:
lper03041
]
Complex C
Other components
EJC/TREX
127312201
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127312201
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
127312201
NCBI-ProteinID:
XP_051198633
LinkDB
All DBs
Position
7:294254900..294277239
Genome browser
AA seq
1783 aa
AA seq
DB search
MSPPPLQAPDYKHVTEECLREWKGQSAAAFRLPDPVPMPRFLYELCWAVVRGDLPPHKCR
AALDSVAFVEEPWQEESGSVLADIVAHLGQDITISGEYRNRLVKMTKSFVESSLIMPRLL
QERCEEEFLWEVEQSKSKGQDLKAKEVRVNTRLLYQQTKFNLLREESEGYAKLITLLCQV
GSDLAGQNASSATISIVKSLIGHFDLDPNRVFDIVLECFELYPDNNIFYQLIPLFPKSHA
AQILGFKFQYYQQLDVNSPVPSGLFRIAALLVKSGLIDLDNLYAHLLPNDDEAFEHFGSF
VSRKIDEATKIGKINLAATGKDLMDDEKQEITIDLHTALEMENDIIEERAPEIEKNQKLG
LLLGFLSVHDWDHAQLLFDRLAQLNPVEHVKICDGLLRIIEKTILPAYSTYCQIHHKISR
NIDTHMTDASSVSSPSYLVDLPKEFFQMLAACGPYLHRDTLLFQKVCRVLKVYHASSKES
ARTAGVMSPESRIEEALGLCLLPSLQLIPANPAVDMEIWGVLSLLPYEARYRLYGEWEKD
TEQNPIVLAARQTAKLDTRRLLKRLAKENLKQLGRMVAKLAHANPMTVLRTIVQQVEAYR
DMINPVVDAFKYLTQLEYDILQYIVIERLAQGGREKVKDDGLNLSDWLQCLASFWGHLCK
KHLSMELKCLFQYIVNQLKKGLGTELVVLEELIQQMANVQYTENMTDEQVDAMAGSETLR
LQSSLFGSTRNYKVLNKSTNKLRDSLHPKDEPKLAIPLLLLIAQHRSKIIINADATYIKM
VSEQFDRCHGILLQYAEFLSSALTPATYVQLIPPLKDLVYKYHIEPEVAFLIYRPVMRLF
KSGNGGEACWPLDGNEEGESVSSDDMILRGDSSQKLITWTDLLETIKTILPPKAWNSLSP
ELYATFWGLTLYDLHFPKDRYDAEIKKLHENLKQLEDNSDNSSIAISRRKKDKERIQDLL
DKLNNESDKHKQHVASVLQRLAREKDKWLSSSPDALKINMEFLQRCIYPRCVFSMQDAVY
CATFVQTMHSLGTPLFNTVNHIDVFICKTLQPMICCCTEYEAGRLGRFLHETLKTAYYWK
SDESIYERECGNKPGFAVYFRFPDSQRVSYTQFVKVHWKWSGRITKVLNQCMESKEYMEI
RNALILLTKITSIFPVMRKSGINIEKRVAKLRGDEREDLKVLATGVAAALAARKSSWLSE
EEFGMGHLDPKPVPAKTVPGNQSADPTTAKDHIVRAKSTEGRHERSENAMRPDAQHKKNA
STANGSDSQIPSSSAQGKVSGVAHGADEPPKLLSDEGVKVLKPTAESETRGPQKRAAHNA
AKVSKHDAVKEDAKPGKSTSRSLNQQASAISVDREVLPPAADGMLDTKTTSPLVGTNGNI
HPAPRKVSASSQRSTALAAHIGGTANPANEGESTDLIDSTVKQQKRSVPVEEQERTGKRR
KGESEVRDGDLTDHHTDKEKKLDSRSVDKFRSSDHERGASEEQNVVRTEKLKEKFDDKYD
RDPREKADRSERRRGEDVVEKPTDRSSERRERSIERMQDRGIDRVPEKGREDRNKEERSK
IKHVEPSIDRAHTSDERFRGQSLPPPPPLPTSFVPQSVVANRRDEDGDRRGGSTRHTQRL
SPRRDDKERWHVEENASLPQDDGKHRREEDLRDRKREDRDVSSSKVDDRDRDKVTMKEDS
DPNSASKRRKIKREQSTLEAGEYAPSAPQPPSLGAGNSQSEIRERERKGAVSQHRPSHAD
DLPRLHAKDSTSKTSRREADQMHDREREEEKRLRTEAKRKHRK
NT seq
5352 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccgccgctccaggcgccggactacaagcacgtcacggaggagtgcctccgc
gagtggaagggccagtccgccgccgccttccgcctccccgatccggtccccatgccgcgc
ttcctctacgagctctgctgggccgtggtgcggggggacctgccgccgcacaagtgccgg
gcggcgctcgattcggtggcgttcgtcgaggagccgtggcaggaggagtccggctccgtg
ctcgccgacatcgtcgcgcacctagggcaggatattacaatttctggtgaataccgcaac
cgtcttgtcaaaatgactaagtcattcgtggagtcttcgttgattatgcctaggcttctt
caagagcgatgtgaagaagaattcctatgggaggttgaacagagtaagtcgaagggccag
gatttaaaagccaaagaggtcagagtcaacacacggcttctttatcagcaaaccaaattc
aaccttctaagggaggaaagtgagggctatgccaagttgataaccctactttgtcaagtc
ggttcagacttagctggccaaaatgcttcttcagctactatcagcattgtaaagtcatta
attggacattttgacctggacccgaatcgcgtatttgacattgtcttggaatgttttgaa
ctctatccagataacaatatattttatcagcttatacctctttttccaaagtcccacgct
gctcaaattttggggttcaagttccaatactatcaacaattggatgtaaacagccctgtt
ccatctggccttttccgaatagcagccttgttggtcaaatctggtcttattgaccttgat
aatctctatgctcatttacttccaaatgatgatgaggcatttgagcattttggctctttt
gtttcaaggaaaattgatgaggctactaaaataggcaaaataaatcttgctgctactgga
aaggaccttatggatgacgagaaacaagaaataacgatcgatttgcacacagcattggag
atggaaaatgatataattgaggagagagcccctgagatagaaaagaaccagaagcttgga
cttcttcttggtttcctctctgttcatgattgggaccatgcacagctactctttgaccgt
cttgcacagctaaatcctgttgagcatgttaaaatttgtgatggcttacttagaattatt
gagaagactattttgccagcctacagtacatattgtcaaatacatcataaaatctcccgt
aacattgacactcacatgacggatgcatcatctgtctcctcaccaagttatttggttgat
ctgccaaaagagtttttccaaatgcttgctgcctgtggaccatatcttcatcgtgacaca
ctattatttcagaaggtttgcagagtgctaaaggtgtaccatgcctcgtcaaaagaatca
gcccgtacagcaggtgtaatgtctccagaatctcgtattgaagaagcacttggattatgc
ttgcttccttcgttgcagcttatacccgccaatcctgctgttgatatggagatatgggga
gttctttcccttcttccttatgaggcacgctaccgtttgtatggtgagtgggagaaggac
actgaacaaaacccaattgtccttgctgcaaggcaaacagcaaagctggacaccagaagg
ctcttaaagcggctggccaaggaaaatctgaagcagcttggccgcatggtggctaaactt
gctcatgcaaatccaatgactgtacttcggaccattgtccaacaggtcgaagcatacagg
gacatgataaatccagttgtggatgcttttaaatacttgactcagctggagtatgatatc
ttgcaatatattgtaatcgagcgcttggctcaaggtggccgtgagaaagtaaaagatgac
ggtcttaatctgtcagactggcttcagtgtcttgcatcattctggggacacctctgcaag
aagcatctttccatggagctaaaatgccttttccaatacatagtcaatcaactaaagaaa
ggattgggcactgagcttgttgtactggaggaactcattcagcaaatggcaaatgtacag
tatactgagaacatgactgacgaacaggttgatgccatggcagggagtgaaacactgcgg
cttcaatcttcactgtttggatcaacacggaactataaggtcctgaataagtctacaaac
aagttgcgggattctttgcatccaaaagatgaaccaaaacttgcaattcctctattactg
cttattgcgcagcacagatccaagattataataaatgcagatgccacatatatcaaaatg
gttagcgagcagtttgatagatgccatgggatactacttcagtatgccgagtttctttca
agtgctttaactccagcaacctatgttcaactaatacctcccctgaaagatctggtttat
aagtatcatattgagccagaggttgcttttcttatataccgcccagtaatgaggcttttc
aaaagcggtaatggtggtgaggcctgttggcctctggatggcaatgaagaaggggagtct
gtatcaagtgatgatatgatcttgcgtggtgattcatctcagaagttaatcacgtggaca
gatcttcttgaaacaatcaaaacaattttgccaccaaaagcctggaacagtctttcacct
gagttatatgctactttctggggtttaacactatatgatcttcattttccaaaagatcgc
tatgatgcagaaatcaagaagctgcatgaaaatctcaaacaactcgaagataactcagat
aactctagcatcgcaatatcacgacgtaagaaggacaaggagagaatccaagatttactg
gacaaattgaacaatgaatctgataagcataaacaacatgttgcatcggtgctccaaagg
cttgcccgtgaaaaggataaatggctgagttccagtcccgatgcactgaagatcaacatg
gaatttctccagcggtgcatatatccacgctgtgttttcagcatgcaggatgctgtgtat
tgtgctacattcgtccagacgatgcattcacttgggactccacttttcaacacagtgaat
catatagatgtttttatctgcaagacactacagccaatgatctgttgttgtacagaatat
gaggctggcaggcttggaaggtttcttcatgagacacttaagacagcctattattggaag
agtgatgaatcaatatatgaacgtgaatgtggaaataagccgggatttgctgtatacttc
agatttccagatagtcaacgtgtatcttatacccagtttgttaaagttcattggaaatgg
agtggaagaattaccaaggtgcttaatcagtgtatggaatcaaaagaatacatggaaatc
agaaatgcccttattctgctcacaaagataactagtatttttcctgtgatgcgaaaaagc
ggcatcaacattgagaaaagggtagcgaagctaaggggggatgagagggaagacctgaaa
gtactggccactggtgtagctgccgctctggcggctcgcaagagctcatggctatctgaa
gaagagtttggcatgggtcaccttgatccgaagccagtgcctgcaaaaactgttcctgga
aatcagtctgcagaccctacgacagcaaaggatcacattgttcgtgcaaaatctactgag
ggtaggcatgaaaggtcagaaaatgcaatgaggcctgatgctcaacacaagaagaatgcc
tcgactgcaaatggatctgatagtcaaataccatcttcctctgcacaaggaaaagtttca
ggggttgcacatggtgcagatgaacctccaaagcttttgtctgatgagggagtcaaggtt
ttgaagcctactgcagaatctgagacaagagggccacagaagcgtgctgcacacaatgct
gcaaaggtatctaagcatgatgcggtgaaggaagatgcaaaacccgggaaatcaaccagc
agaagtcttaatcaacaagcctctgctatttctgtagacagagaagtattgcctccagca
gctgatggtatgctggatactaaaactactagtcccttggttggaactaatggtaacata
catccggcgccacgaaaggtatcagcatcctcccaaagatcaacggcgttggctgcacat
attggtggaacagctaatcctgccaacgaaggtgaatctactgacttgattgattctacc
gtgaaacagcaaaaaagatctgttcctgttgaagaacaagagagaacaggtaaacgaagg
aaaggggagtctgaagtccgggatggtgacttaacagatcaccatacagacaaagaaaaa
aagttggactcgcgatcggtagataaatttcgttcttctgatcacgagagaggtgctagt
gaggaacaaaacgtagttaggacagagaaattaaaagaaaagttcgatgataaatatgac
agagatcctagagaaaaagcagaccggagtgaaaggcgacgtggagaagacgtggttgag
aaaccaacagacagatcatctgaaaggagagagcgttctattgaaaggatgcaagacagg
gggatagacagggttcctgaaaaaggaagagaagacaggaataaggaggagagaagcaaa
attaagcatgttgaaccctccatagaccgggcacatacttctgacgaacggttccgaggg
caaagcttaccaccacctccacctcttccaacaagttttgtaccccaatcagtcgttgcc
aaccgaagagatgaagatggtgaccgaaggggtggcagcaccaggcatacacaaaggttg
tctcctaggcgtgatgacaaagaaaggtggcatgtggaggagaatgcttcactgccgcag
gatgatgggaaacatagaagagaggaagatctccgggatagaaagcgggaagacagggat
gtttcatcaagcaaggtagatgacagggatagggacaaagttactatgaaggaagatagt
gaccctaatagtgcttccaaacggcgaaagataaagagagaacagtctactctagaagct
ggagaatatgcaccttctgctccacagcctccgagccttggagctggtaactcgcaatcg
gaaatacgagagagagaaagaaagggtgctgtttcacagcatcggccgtcacatgctgat
gaccttcctaggttgcatgccaaggattcaacaagcaagacaagtcgtagagaggctgac
caaatgcatgatagagaaagggaagaggaaaagcggctaagaactgaagcaaaaagaaag
catcggaagtag
DBGET
integrated database retrieval system
