Lolium perenne (perennial ryegrass): 127313809
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Entry
127313809 CDS
T08650
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127313809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lper03041
]
127313809
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127313809
Spliceosome [BR:
lper03041
]
Complex C
Other components
Step II factors
127313809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
S1
AAA_19
AAA_30
AAA_16
Sigma54_activ_2
Cas3-like_C_2
DUF6623
Flavi_DEAD
nSTAND3
T2SSE
TsaE
Motif
Other DBs
NCBI-GeneID:
127313809
NCBI-ProteinID:
XP_051200232
LinkDB
All DBs
Position
7:227257326..227260860
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AA seq
1064 aa
AA seq
DB search
MAGAGSSGGASEAMRRLTDLSLVSKVCSELEAHGGVGDRHLAEFIVHLARRSPSVAEFHA
RLREHDFQAPDYLARTLHTLIHAIPAAAPAPQNLASDGEEEEEEGAADPELYLVYHGRVT
RVVDAGCFVRLDGARGREGLVHASRMPALAAVRRGQGVFVKVVSLDWGNLALSMLDLDQE
TGREIPPPARRQSDDDGVPRANRSAAPAGTSGKRVGLSGIVIAEEGPAPRRRARRMSSPE
RWELKQLIASGALNARDHPAVFDEDDEGIQYQEEEEEEMEEELEIELNEDEPPFLSGQGR
SSVELSPVRISRNPEGSLSQAATLQAALVKERRDIQSQEQRAMLDSIPKDLNRPWEDPVP
DAGGRCIAQELRGAGLSARSMPEWKKEAYGKTVTFGQRSNLSLQEQRQSLPIYRLKNELI
EAVHRNLVLVVIGETGSGKTTQVTQYLAEAGYTAGGKIVCTQPRRVAAESVAKRVAEESG
CRLGEEVGYCIRFDDRTGPDTVIKYMTDGMLLREIMVDRNLSGYSVIMLDEAHERTIYTD
ILFGLLKKLIRRRDDLKLIVTSATLDAEKFSGYFFDCNIFTIPGRTFPVEILYAKQPQSD
YMDSALRTVLEIHMSEPEGDILLFLTGQEEIDHACSYLHEKMQALGKDAPDLLIYAAYGA
LPSEMQSKIFEPTPPGKRKVVVATNIAEASITIDGIYYVVDPGFAKVNVYNPKRGLDSLT
ITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPPTSTPEIQRINLGWTVLNMKAM
GINQLGAFDFMDPPAPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPQEPPLSKMLLA
SVDLGCSDEIVTIIAMIQTGNVFYRPREKQTQADRKRGNFFQPEGDHITLLTVYQAWKAK
QFSGPWCVENFLQISSLRRAQDVRKQLLEIMDRYRLDVVSAGNDLTKVRRAITAGFFFNT
ARKDSQGGGYRTLADNQQVYIHPSSALFHQQPQWVIYNEIVMTSKEYMREVTAISPAWLV
ELAPRFYKSIDLAKMSKRKRQERLEPLHDRYNEPNSWRLSKRHG
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggcgggctcgtccggcggggcgagcgaagcgatgcggcgcctcaccgaccta
tccctcgtctccaaggtctgctccgagctggaggcccacggcggcgtcggcgaccgccac
ctcgccgagttcatcgtccacctcgcccgccgctccccctccgtcgccgagttccacgcc
aggctcagggagcacgacttccaggcgccggactacctcgcacgcaccctccacaccctc
atccacgccatccccgccgccgctcccgccccccaaaacctcgcctccgacggtgaggaa
gaggaggaagagggcgctgcggatccggagctgtacctggtgtaccacgggagggtcacc
cgggtggtggacgccgggtgcttcgtgcgcctcgacggcgcgcgcggccgcgaggggctc
gtccacgcctcccggatgcccgccctcgccgccgtgaggcgcggccagggggtgttcgtc
aaggtcgtctccctggactgggggaacctagcgctgtcgatgctggacctcgatcaggaa
actggaagggagatcccgccgccagcgcgtcgtcaatctgacgatgatggtgttccgagg
gccaatcgatcggctgctcctgccggaacctctgggaagagggttgggctgtcaggaatt
gtgattgccgaggaggggcctgcaccacggaggcgggcgaggcggatgagctccccggag
aggtgggagctgaaacagctgattgcttccggggcactgaatgcgagggaccaccctgct
gtcttcgacgaggatgatgaggggatacagtaccaggaagaagaagaagaagaaatggag
gaggagctcgagattgagctcaacgaagacgagccgccgttcttatctggacagggccgt
tcctcggttgaattgtctccggtcaggatttccaggaaccctgaggggtcactgagccag
gctgcaacactgcaagccgcgcttgtcaaggagcggcgcgacattcagagccaggagcag
agagcaatgcttgattccatccccaaggatctcaatcggccgtgggaagatcctgtgccc
gatgctggcggccggtgtatcgcgcaggagctgaggggcgccggcctatcagcgcggagc
atgccggagtggaagaaggaggcttatgggaagactgtaacgttcgggcagaggtcgaac
ctttccctgcaggagcagaggcagagccttccgatttacaggctgaagaatgagctcatc
gaagctgttcatcgcaatctagttttggtcgttatcggcgagacggggtcagggaaaacc
acacaggttactcagtaccttgccgaggcaggctacactgcaggtgggaaaatcgtgtgc
acgcagcctcgcagggttgctgcggagtcggttgcgaagcgggtagcagaggagtctggt
tgtcgattgggagaggaagttggttactgcatacgtttcgacgatcgcactggacctgat
acggtcattaagtatatgacagatgggatgctcctacgggagattatggtagacaggaac
ctctctggttactctgtgatcatgcttgatgaggcacatgagaggaccatctatacggac
atcctctttggcttgctaaagaagctgattaggcggagagatgatctcaagttgattgtc
acttccgctactcttgatgcagagaaattctctggatatttcttcgattgcaatattttc
accattcctggaagaacgtttcctgtggagatactgtatgcaaaacagccacagagcgat
tacatggattctgcattgcgcactgtgttggagatccatatgagtgaacctgaaggcgac
atcctcttgttcttgactggccaggaagagattgatcatgcctgtagctatcttcacgag
aagatgcaggcgctgggtaaggatgcacccgatttgctaatctatgcagcgtacggtgct
cttccaagtgaaatgcagtcaaagatctttgaacctactcctcctgggaagaggaaggtg
gttgtggcaaccaacatcgcagaagcatctattacgattgatgggatatactatgttgtt
gacccaggatttgcaaaagttaacgtgtataacccgaaacgaggactggattcactgact
atcactccgatctcgcaggcatcagctaagcaaagagcagggcgtgctgggcgtacaggc
ccaggcaagtgttatcgtctgtacacagaaagcgcgtatcgtaatgaaatgcccccaacg
tcaactccggaaattcagaggataaacttggggtggacagttcttaatatgaaggcaatg
gggatcaatcaactaggggcatttgacttcatggaccctccagcaccccaagcacttatc
tctgctatggagcagttgtacagccttggtgccttagatgaagaaggtctgcttactaaa
ctagggagaaagatggccgagtttccacaagaaccaccactttcgaaaatgctcctggct
agtgtggacctcggatgcagcgatgaaatagtgactatcattgcaatgattcaaactggg
aatgtgttctatcgtccgagggaaaaacaaactcaggcggatcggaaaaggggtaatttt
ttccagccggaaggggatcacatcactttactcacagtgtatcaggcgtggaaggcaaag
cagttttcggggccatggtgcgttgagaattttcttcagatatcatcactgaggagagca
caggatgtgaggaagcagctcctggagatcatggacaggtataggcttgatgttgtctcc
gctggcaatgatctcacaaaggtaagaagagccatcaccgcaggcttcttcttcaacact
gccaggaaggattcccagggaggaggatacaggacccttgctgataaccagcaggtatat
atccacccaagcagtgcactctttcatcaacagccacaatgggtgatttacaacgaaatt
gtcatgacctcgaaagagtacatgagggaggtcacagccatcagcccagcatggcttgtc
gaattggcaccgaggttctacaaatctatcgacctggcaaagatgagcaagcggaagcgc
caggaaaggctcgagcctctgcatgacagatacaacgagcccaactcgtggcgcctcagc
aagcgccatggatga
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