Lolium perenne (perennial ryegrass): 127314672
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Entry
127314672 CDS
T08650
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127314672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lper03021
]
127314672
03019 Messenger RNA biogenesis [BR:
lper03019
]
127314672
Transcription machinery [BR:
lper03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127314672
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
127314672
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
127314672
NCBI-ProteinID:
XP_051201140
LinkDB
All DBs
Position
7:complement(192058918..192066144)
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AA seq
924 aa
AA seq
DB search
MASAAAAAAAAPVSGQVVQRFRARLREEAGEEPGAAAVVAVYDEVLADLTFNCKPIITEL
TIIADQHAARAARGIAAAICARIFEVPAEQTLPALYLLDSIVKNIGREYIAQFSTRLHKV
FCYAYRKVHPNQHGSMRHLFRTWSQVFPSSVLRGIEDELQFSPSENKRPATTNNARQSES
LSPKPSHGIHVNLKYLEEPHQFKHGSKVDQLATLGRQMIDVEEDHINGLTSNNLRGFPAA
SSKLQKSTILYADDPDQQETFRSRTGMTRRDMSRSPPRDVLPRNASPMRPPERLPLSHSV
LGHDPRRLPDRNGWFERQWAFEDGPQRPSMSMLDEEHRKRSARELIDAYGNSQANDTDER
LPKMQRLESNGMSGRSSAQNWLTSEEEEYSWEDMSPTLSIRNRNGMSLPSSETLRAGFPG
PNSGQMDSDIGMRSWQGQASQSAADRPALILEDRIPTAGHVDMATRRYTGNFGPRNGAIS
EYHSSENTLDTGRILAMQAPPWQQTNGLPVRVQAPHPSLNRLPLPTDGEMPVKRLAAGGT
YDAMNIDIENHRPPLTPAPIEWPPLHHNQPPPDTKYIRHATDSLEIRPFISQGVNSSVFV
PRRQYDSLDRKTVSTVNLAQPPYQHPDLLTSRQQNKGTILENQSQPHHTQQFHPHTQSRP
QEAFRGFASSIPVDPTRNPFQGQGGSATTPPVPPLPMPSFALQPMHRGLPPASLQMGPSS
SQVGGPTPYFSGILSNLVQQGVIKLDPPSQPQDAVGVNFNVDLKVRNESVINALYQDLPR
QCKTCGLRFKCQEEHRVHMDWHVTKNRNSKNRKQSSRKYFVTVREWLRAAETVGTDGVPS
FEHMEPVLDRNEEKEMAVPADEDQTTCALCQETFEEFYSDETEEWMYKGAVYMNAPDGNI
VGLERSHLGPIVHAKCCSGPSGTS
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgccgccgccgccgccgccgcggcccccgtctcggggcaggtcgtgcagcgg
ttccgcgcgcggctgcgggaggaggccggggaggagccgggggcggccgcggtcgtggcc
gtctacgacgaggtcctcgccgacctcaccttcaactgcaagcccatcatcaccgagctc
accatcatcgccgaccagcacgccgcgcgggccgccaggggcatcgccgcagccatctgc
gcccgcatcttcgaggtgcctgccgaacagacattgccggctttatatctgctagatagt
attgtgaagaacataggacgagaatacatagcgcagttttccactaggttgcacaaggtg
ttctgctatgcatacaggaaagttcatcctaatcagcatggttcaatgcggcacctcttt
cgtacctggtcgcaagtgttcccttcttctgtccttcgagggattgaggatgagcttcag
ttttctccttcagagaataagcgtcctgccacaacgaataatgcgcgacagtcagagtcg
ctatctcctaagccatctcatggcatccatgtaaatctcaagtatctcgaagaaccgcac
cagttcaagcatggcagcaaggttgatcaactagcaactctaggcaggcaaatgattgat
gtggaggaggatcatattaatgggttaacatcaaataacttgcggggatttcctgcagct
tcttcaaagctccagaaatctacgatactttatgctgatgatcctgatcaacaagagaca
tttcggtcacgtactggaatgacaagaagagacatgtccagatcaccacctcgtgatgtc
ctccctaggaatgcatcccccatgagaccaccagagaggctaccgctgtctcattctgta
ttgggacatgatcccagaagattgcctgatcgaaatggttggtttgaacgacaatgggct
tttgaggatggcccacagcggccttcgatgagtatgcttgatgaagagcataggaaacga
agtgcaagagaacttattgatgcttatggaaattctcaagccaacgatactgatgaaagg
cttcccaagatgcaacgcctagaatcaaatggcatgtcaggcagatctagtgcacaaaat
tggctcacttcagaggaagaggagtattcttgggaggatatgagtccaactttgtctatc
cgaaacagaaacggcatgtccttaccttcttctgaaaccttgagagctggctttcctggg
ccaaactctggacagatggattctgatattgggatgcgcagttggcaaggccaagcttct
cagtcagcagcagatcggccggcattaattctcgaagataggattcctactgctggtcat
gttgacatggccactaggcgatatacaggcaattttggtccccggaatggagctatttca
gagtaccatagttctgagaatacccttgatactgggagaattcttgctatgcaagctcca
ccttggcaacaaacaaatggtctgccagtgcgagtacaagcacctcatccttcactgaat
aggttgccactgcccactgatggtgaaatgcctgttaagaggttggctgctggtggtaca
tatgatgctatgaatatagacatagagaatcataggcccccacttactcctgctcccata
gaatggcctcctcttcatcataatcagccaccacctgatacaaagtacattagacatgca
acagatagtcttgaaattaggccatttattagccaaggagtcaattcatctgtatttgtt
ccacggcgtcagtatgattccttagatcggaaaactgtaagtaccgttaacttagctcaa
ccaccatatcagcacccagatttgttgacatccagacaacaaaataaaggcacaattttg
gaaaatcaatctcagcctcatcatacacagcagtttcatcctcatacccaatctcgccct
caggaggcatttagaggctttgcatccagcatccctgtagatccaacccgaaatccattc
caaggacaaggaggtagtgcaacaacgccaccagtcccaccgctaccaatgcccagtttt
gctctgcaaccaatgcatcgaggtctacctcctgcttcactgcagatgggtccatcatca
tcacaagttggtggccctacaccatatttttctggaattttaagtaaccttgtgcaacag
ggtgtaattaaactggatcctcctagtcaacctcaggacgctgttggagtcaacttcaat
gtagacctcaaggtacggaacgagtctgtcataaatgctctgtatcaggatctccccagg
caatgcaaaacttgtggccttcgtttcaaatgccaagaagagcaccgtgttcatatggat
tggcatgttacgaaaaacagaaattccaaaaatcgcaagcaatcttcacgtaaatatttt
gtcactgtgagggagtggttaagagcagcagaaacagtaggaactgatggtgttccttct
tttgagcacatggaaccagtccttgacagaaatgaagagaaagaaatggctgttcctgcc
gatgaggaccaaacaacatgtgctttatgtcaagagacatttgaggagttctacagtgat
gaaactgaggagtggatgtataaaggtgcagtttacatgaatgcgccggatggtaatatt
gttggtcttgaaaggtcgcatttggggcctattgtccatgccaaatgttgttctgggccc
agcggtacttcttag
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