Lolium perenne (perennial ryegrass): 127314812
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Entry
127314812 CDS
T08650
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03022
Basal transcription factors
lper03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127314812
09124 Replication and repair
03420 Nucleotide excision repair
127314812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lper03021
]
127314812
03400 DNA repair and recombination proteins [BR:
lper03400
]
127314812
Transcription machinery [BR:
lper03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127314812
DNA repair and recombination proteins [BR:
lper03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127314812
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
127314812
NCBI-ProteinID:
XP_051201299
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All DBs
Position
7:178504793..178513295
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AA seq
604 aa
AA seq
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MGTMTIGAKYKTTVRDPGTIGILRMSEDKLTFTPNDPRSLMKLNVDFRTIKGHKFNKVDG
SKPTPPLLNLSKDSDKGGGYMFEFDNVGSRDSCRDFVARVLGKHQGIVPPRPNAPPEKSV
ASTGPDQLSSAEMERRMKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDEASKSS
KQKPGFKSAMLADVRPSADGQTNKVTFSLTTEIIHQIFAEKPAVHRAFLDYVPKKLSEKD
FWTKYCRAEYLLRTKNTLAAKAEAAEDEELAMFLKNDDILAKEAKLKIKRVDPTLDMEAD
AGDDYTHLADHGILRDGSRETVDADSELAGRTLSQDLNRHAAVVLEGRSTDVESTDTKTV
AEALARSKKEPPSSSVSEDTSHERSLKVARMTEIEDLQAPRSLPYAPLCIKDPREYFDSQ
QANALRPLGGSNEGRKARSCSLSTDDAFRHLMDQMSLIKDNKLNIPVLQSDVALKVLNEL
NEGISRSRRLNLKNPQDSLLGHLPHRTRDELMDHWTAIQELLRHFWSSYPITTTVLYNKV
QRVKDAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFNHDLEQQQKSSKAGSK
PNGF
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggggaccatgacgatcggcgccaagtacaagaccacggtcagggaccccggcaccatc
ggcatcctccggatgagtgaggataagctgacatttacccctaatgatccacgctctcta
atgaagctcaatgtcgatttccggaccatcaaaggtcacaagttcaacaaagtagatggg
agcaaaccaacaccaccattattgaatctttcaaaagattctgacaagggcggtggctac
atgtttgagtttgataatgttggtagccgtgactcatgccgcgactttgtagctagggtt
ttaggcaaacatcagggtattgtacctccaagaccaaatgcacctcctgaaaaatcagtt
gcgtcaactggtccagatcagctcagttctgccgaaatggaaagacggatgaaattgctg
cgagaagacagtgaattacagaagttacataagaagtttgttcttggaaatattctgcaa
gagtctgaattttgggctacaaggaagaatttacttgatgatgaagcaagcaaatcatca
aaacaaaagccaggtttcaaaagtgccatgctagctgatgttaggccatccgctgatggg
cagacgaataaggttactttcagtctgactactgagattatccatcagatttttgcagaa
aagccagccgtgcatcgggcatttttagattatgttccaaagaagttgtcggaaaaggac
ttttggacaaaatactgtagagctgagtatctacttaggacaaaaaatactttagcggcg
aaagctgaggctgctgaagatgaggaattagctatgttcttgaaaaatgatgatatactt
gccaaggaggcaaagctcaagataaaacgagtagacccaaccttagacatggaggcagat
gcaggggatgactacacccatcttgcggatcatgggattctccgtgatggcagcagagag
acagttgatgctgatagtgagttggctgggagaacgctttctcaggatctgaatcggcat
gctgctgttgttcttgaagggagatcaacagatgtcgaatcaactgatacgaagactgtg
gctgaagcacttgcaaggtccaagaaggaaccaccttcaagttctgtttctgaggatact
agtcatgagagatcgttaaaggtggcccgcatgactgagatagaggatttgcaagctcca
cgaagtctcccatatgcaccactttgtataaaggatcctcgagaatattttgattcccag
caagcaaatgctctgagacctttaggtggcagtaatgagggaagaaaggcccgcagctgc
agcctgagtacagatgacgcattccgtcatttgatggatcaaatgtctttgataaaagat
aataaattgaacattccagttcttcagtcagatgtggcccttaaggttcttaatgaattg
aacgaaggaatttcgcgttcgcggaggcttaatctgaagaatccacaagacagtctcctc
ggtcatcttccacaccgtacgcgagatgaacttatggatcattggacggctatccaggag
ttgctgcgccatttttggtcatcataccctataacaaccacagtcctttataataaggtt
caaagggtgaaggacgcaatgacacagatatatcagaagttacaggatataaaggaatca
gcacagcctgatgtaagacatgaaatatctcagcttgtgaagcccatgacccaggcgctg
gatgctgccttcaaccatgatctcgagcagcagcagaaatcttcaaaggctgggagcaag
cccaatgggttttga
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