KEGG   Lolium perenne (perennial ryegrass): 127314832
Entry
127314832         CDS       T08650                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
lper  Lolium perenne (perennial ryegrass)
Pathway
lper03018  RNA degradation
lper03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lper00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    127314832
  09123 Folding, sorting and degradation
   03018 RNA degradation
    127314832
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lper03019]
    127314832
   03041 Spliceosome [BR:lper03041]
    127314832
Messenger RNA biogenesis [BR:lper03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     127314832
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     127314832
Spliceosome [BR:lper03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    127314832
 Complex C
  U2 snRNP components
    127314832
SSDB
Motif
Pfam: LSM SM-ATX LSM14 DUF1256 DUF150_C
Other DBs
NCBI-GeneID: 127314832
NCBI-ProteinID: XP_051201319
LinkDB
Position
7:179385548..179389007
AA seq 93 aa
MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC
FIRGSVVRYVLLPQDGVDIDILHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgctgttcttctcctacttcaaggagctcgtcgggaaggaagtgacagtggagctcaag
aacgacctggccatccgtggcacgctccactcggtcgatcagtacctcaacatcaagctc
gagaacactcgggtcgtcgaccaggagaagtacccccacatgctatcggtgcggaactgc
ttcatcagaggatctgtggtgcggtacgtgctccttccacaggacggggttgacatcgac
atcctccatgatgccaccaggagggaggcacggggcggctga

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