Lolium perenne (perennial ryegrass): 127316124
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Entry
127316124 CDS
T08650
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
lper
Lolium perenne (perennial ryegrass)
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lper03021
]
127316124
03036 Chromosome and associated proteins [BR:
lper03036
]
127316124
Transcription machinery [BR:
lper03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
127316124
Chromosome and associated proteins [BR:
lper03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
127316124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
Spt6_S1
HTH_44
HHH_9
SH2
Tex_central_region
Tex_N
Tex_YqgF
DUF6918
Motif
Other DBs
NCBI-GeneID:
127316124
NCBI-ProteinID:
XP_071679964
LinkDB
All DBs
Position
7:complement(36999418..37005605)
Genome browser
AA seq
1484 aa
AA seq
DB search
MSPRTVASDEEDDFIEADEQDPQLSHREEDDMEDQDDDDGEELEGGEEDDDDEDEEEGQN
EYENDGFIVDEDEEEEEEQPGSDDERRRKKRKKRGSHEYTLDEDDIALLQENNNGMANEP
VKKYKRLKKARSQSETGEGPGYVDDDGSGNAYAEENVQDEIIEEDQQTGEDYIDDDDDFI
VDDEIDERGQVVKRNKAFNRTLRHAEGVTSSALQEAHDLFGDVDDLLARRAKDLERTASN
SSALTENRLEDEFDPIILADKYMTPRDEIIKQTDVPERMQLSEELTGTGEELTKEQMEEE
SLWVHSQLTADGFISFAGNEHVNTEIDQKDILNVLTMLHVNKFEIPFIEMYRKESCPSLL
TGYYASAQKNAEVAPKMRWYKLLWAVETLDRKWLLLQKRKKALKGYYVKRFDDEKQKIDD
VTRFAQRQQLHDTIIEALNDAKSEKEVDDVDAKFNLHFPPGEVEVVGQLKRPKRKSMYNI
CQRAGLREVTYQFGRSAEQLGHHLALTKIPEADELDSGKDSPEDVAANFTCAMFETPQDV
LRGARHMAAVEIGCEPIVRKHIRSIFMDKAVVSTVPTPQGNLIIDPHHQLSRIKWLREKP
VTKFVGAEWLLIQKGEDEKLLKVTVKLPEDVKKHLISDARENYLSDCVSKSAQMWDEQRK
MILDDAFSSFLLPSMEKEARSLLTANAKSWLRMEYGKQLWDKVSASPWKKKKDEREKDDD
EIDLDEESELRVMACCWGPGNPTTTFVMLDSSGELVDVLYAGSISTKSRGGADEQQRNKD
NQQRVVKFMTDHQPHVVCVGASNLNCRQLREDLYEVFFRIVEDHPRDINEQMANFSSVYV
DESVPRLYENSQISSDQLPAQTGIVKRAVALGRYLQNPLATVATLCGPRKEILSWKLHTL
QEFLTPEEKYEVVEQVMVDATNQIGFDVNLSASHEWHSSTLQFVAGLGPRKASALQKELV
REGSIFSRKELAEPLRRKVFHNASGFLRVRRSGAAAASTEIIDLLDDTRIHPESYALANK
LAKDVYGEGAPRERDEMDEDEQEMAIEHVRERPDFLQRLNIDEYIKSIPEDLRKRDTLHD
IKTELLCGFPDCRTPYAEPTPDEEFWMLSGETEESLSDGKIVQVTVRLIQESRIVCTFDS
GLKAIVLGDNYSDDGFDPESLRIHQGDILTGKIKNVNRNRFQVYLTCKDSDMRRSLSTRN
HDPYYHEQAMVSQDELDKARKQKELAKKHFNLRMIVHPQFQNLTAEEAKQFLSDKEPGEK
VIRPSSRGPSFLTLTLKFFDGVYVHKDIAESGKDRKDVTSLLRLGKTLTIDGEDFEDLDE
VVDRYVDPLVGHLKSMLSYRKFRKGLKNEVDNMLRAEKAGKPNMIVYSFGISHEHPGTFI
LTYIRGTNPHHEYVGLNSKGFRFWKRDFDCVDRLVSYFQKNINRPPIDAGASARNVAAMV
PMRVSGGGATASAFSHAGNYSGWGSAGKSAQDGGSSGWGSGRGL
NT seq
4455 nt
NT seq
+upstream
nt +downstream
nt
atgagcccacgaactgtggcatccgacgaggaagacgacttcatcgaggccgacgagcag
gatccgcagctctcacacagggaagaggatgacatggaagaccaagacgatgatgacggc
gaggagttggaaggcggtgaggaagatgatgacgacgaggacgaggaagagggacagaat
gagtacgagaatgatggtttcatagtggatgaggatgaagaggaagaagaggaacaaccg
ggaagcgatgatgagagacgaaggaagaaaaggaagaagaggggatcacacgagtacacg
cttgatgaggatgacatcgcgctgctccaggagaataataatggcatggcaaacgaacct
gtaaagaagtataagcgcttgaagaaggcaagaagccaatctgaaactggagaaggtccc
ggatacgtcgatgatgatggatcaggaaacgcgtatgccgaggagaatgttcaggatgaa
attattgaggaggatcaacagacaggggaagattacattgatgatgatgatgattttatt
gtggacgatgaaatagacgagagaggacaagttgtcaaaaggaataaggcgtttaatagg
acattacgacatgcagaaggcgtaacgtcatcggcactgcaagaggcccacgatttgttt
ggcgacgttgatgatctattagcacgaagagcgaaagatcttgagaggactgcttctaat
tctagcgcgttgacagaaaacaggcttgaagatgagtttgacccaattattcttgcagac
aagtatatgacaccaagggatgagataattaaacaaactgatgtacctgagaggatgcag
ctgtctgaagaattgactggcacaggggaagaattaactaaagaacaaatggaagaagaa
agtctatgggtacacagccagctcactgctgatggatttatatcctttgcaggcaatgag
catgtgaacacagagattgaccagaaggacattctgaatgtcttgaccatgctacatgtc
aacaaatttgagattccattcattgagatgtataggaaggagagttgtccgagtctgtta
actggctattatgccagtgcgcagaagaatgcagaagtggcacctaaaatgaggtggtat
aagctgctttgggctgttgagacattagatagaaagtggctacttcttcagaaacgtaag
aaagctttgaaggggtactatgtaaaaagatttgatgacgagaagcagaaaatagatgat
gttacaaggtttgcacaacgccagcagcttcatgacacaatcattgaagcactgaatgat
gccaaatcagagaaagaggtggacgatgttgatgcgaaattcaatttacatttccctcct
ggtgaagttgaagttgtaggtcagttgaagcgaccaaaaaggaaatccatgtacaatata
tgtcagagggcagggttacgagaggtcacttaccaatttgggcggagcgctgagcaatta
ggacaccatctagctttaacaaagatacccgaagctgacgagcttgacagtgggaaagat
tctcctgaagatgttgctgcaaatttcacatgtgcaatgtttgaaacaccccaagatgtc
cttcggggtgccagacacatggcagcagttgagatcggttgtgagcccattgtaagaaag
catatcaggagtatattcatggataaagctgttgtctcaacagtccccacacctcaggga
aatttgattatagatccccatcaccaactatcgcgcattaaatggctacgggagaaacct
gtaaccaagttcgtaggtgcagaatggcttcttattcagaaaggagaggacgaaaaactc
ctcaaggtcactgtaaaactaccagaagatgtgaagaaacacctcatttccgatgctcgt
gagaattatttaagcgactgtgtcagcaagtctgcacagatgtgggacgagcaacggaag
atgatactggacgatgccttctccagtttccttcttccgtcaatggaaaaagaagctcgg
tctctgttgacagcgaatgccaaaagttggctccgtatggaatatgggaaacagctctgg
gataaggtttctgcttctccttggaagaagaagaaggatgaacgcgaaaaggatgatgat
gagattgacctggatgaggaatcagagctgagagtcatggcctgctgctggggccccggg
aatcctacaaccacattcgtgatgttagattcatcgggggaactggttgatgttctgtat
gctggttccatcagtactaaatctcgtggtggtgctgatgagcaacagagaaataaagat
aaccagcagcgagttgtgaagtttatgaccgaccatcagccacatgtcgtttgcgtagga
gcatcaaacttgaactgcagacaactcagggaagatctttatgaggtattttttagaatt
gttgaagaccatccaagagatatcaacgagcaaatggcaaatttcagcagtgtctacgtt
gatgaatctgtgcctcgcttgtacgagaattctcaaatatcttcagatcaactgcctgcc
cagacaggtatcgtgaagcgggctgtggcgctcggtcggtacttgcagaatccattggcg
acggttgcaacactctgtggacctcgaaaagagatactgtcatggaaactacacaccctc
caagagttccttactcctgaagagaagtatgaagtcgttgagcaagtgatggtggatgct
acaaatcagataggttttgatgttaacctttctgctagccacgagtggcattcttcaact
ttacagttcgtcgctggtctgggtccacgcaaagcttccgctctgcagaaagagttggta
agagagggatctattttcagtcgcaaggagcttgcagaaccactacgaaggaaagtattc
cataacgcctctgggtttctacgtgttcgaaggagcggtgcagcagcagctagtactgaa
atcattgatctgcttgatgatacaaggatccaccctgaatcatatgcattggccaataaa
ttggccaaggatgtctatggcgagggcgctccgcgtgaaagggatgagatggatgaggat
gagcaagagatggcaattgagcatgtaagagaaaggccggactttcttcaacgtctcaac
atcgatgaatacataaaaagtattcctgaggatttacgtaaaagggatacactgcatgat
ataaagacggaattactgtgtggttttcctgattgtaggaccccctatgctgaacccact
cccgatgaggaattctggatgctctctggtgaaaccgaggagagcctatcagatggaaag
attgttcaagtaacagttcgccttatacaagagagccgaattgtttgcacttttgattct
ggtttaaaagccatagttcttggggacaactattctgatgatggatttgacccagaatct
ctgcggattcatcaaggcgatatattaaccggcaaaattaagaacgtgaatagaaatagg
ttccaagtttacctaacatgcaaggacagtgacatgagaagatcattatccacaaggaat
catgatccgtactatcatgaacaagccatggtttcacaggatgaactagataaggctcgg
aaacaaaaggaacttgcaaagaaacatttcaatctgcggatgattgtccatcctcagttt
cagaacttgacggctgaggaagcaaagcagttcttgtcagataaagaacctggtgagaag
gtcattcgacctagttctaggggcccctcgtttttaactcttactctcaaatttttcgat
ggagtctacgtacacaaggacatagctgaaagcgggaaggatcgtaaagatgtgacaagt
ctgcttcgccttgggaaaacactgaccatcgatggtgaagattttgaagatcttgatgag
gttgtggacagatacgtggatccattggtaggccacctgaagagcatgctatcttaccgc
aaattcaggaagggcctaaaaaacgaggtggataatatgctaagggcagagaaagcaggg
aagcctaacatgatagtctactcctttggcatatcccatgaacatccaggcaccttcata
ttaacttacatcaggggcacaaatccgcatcatgagtatgttgggctaaactcaaagggc
ttcaggttttggaagagggacttcgattgtgttgatcgcctcgtgtcgtacttccagaag
aatatcaacagaccaccaattgacgctggtgcatcagcaagaaatgttgctgcgatggtt
cctatgagagtttctggtggtggcgcaaccgcttcagctttttctcacgctggtaactat
tcaggatggggcagcgccggaaagtcagcacaggatggtggaagcagcggatgggggtct
ggacggggcttgtga
DBGET
integrated database retrieval system
