Lolium perenne (perennial ryegrass): 127317155
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Entry
127317155 CDS
T08650
Name
(RefSeq) varicose-related protein isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127317155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127317155
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127317155
mRNA degradation factors
5'-3' decay
Decapping complex
127317155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
Beta-prop_Vps41
Beta-prop_TEP1_C
DUF445
Beta-prop_HPS5
Beta-prop_IFT140_1st
Retrotran_gag_4
Motif
Other DBs
NCBI-GeneID:
127317155
NCBI-ProteinID:
XP_051203635
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Position
7:70225744..70233830
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AA seq
1291 aa
AA seq
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MASPSGNPNPTSSAPFELASLFNPPANPTTVPSPTGIFPGAPPGAPMASAPPGPYSYPPA
TPPFHRNPYLPYPPDPTSAAHFPAAAYTNPNPTPNPLPVPNPGPNPSARLMQLLGNAHLE
PTSSPSDFSSGVPAGMPSAPPARMPSAPPARMASSKMPRGRLLGPGDRAVHDVDSRLPGE
TRPPQLEVTPITKYTSDPGLVLGRQIAVNRNYIVYGLKMGNIRVLNINTALRSLLRGHTQ
RVTDMAFFAEDVHRLASASVDGRIYVWKIDEGPDDENKPQITGKIEIAIQIGDAEIYHPR
ICWHSHKQEILFIGIGNCVLRIDTTKVGRGRDFNVEEPLKCTLDKLIDGVYLVGKHDGDV
TDLSLSQWMTTRLASASKDGTVKIWDDRRALPLSVIKPHDGKAVYSVSFLTAPEQPNHIN
LVTAGPLNREVKIWASSDKEGWLLPSESETWRCTQALELVSSLEHKHEEAFFNQVAVLPQ
ASLILLANAKKNAIYAVHVEYGPDPVSTRLDYIADFTVAMPILSLTGTYGSQPDGEQVVQ
VYCVQTMAIQQYGLEVSLCLPPTADNTSLGRDPVLSHVYDRPLEVASVESSSGTKPLSDH
QGTDADTTAHVPSLTPTSNMNNAGSSADPSKGPSLGDHDGDQSSFDYSSKKVINGDGTSG
QGAFGREDSVGKEDPTGQGEATVSDAHSTFNGRVKATHLITPSEIISGVIPSAETTAKGS
PHNVEVESKHVVEKKPDQNVKFEAAKETQIVHEKMERLNMSSERSVESISERSVTTDKYN
VDDFQRSDPMLSKQHSGAGDGNVQSRTTEVPEKTDVSVASRNLQLPAATIQKVLHPQVSG
QLSPLTSSFNSNDSSPSNANPAIDSASQVAAIQGTLHQLMAMQTDMQKQLNTIVSAPIAK
EGKRIETSLGRNLEKSVKANVDAMWARFQEENARHEKAEKERTQQFATLITTSINKDIPA
MLEKSLKKEISSLGTNVARTTVPIIEKSLSSAVSDSLQKVLGEKVVNQLDKSISTKLEAT
VTKQIQTQFHTSVRQALQDSLRSSFESSVIPAFEQSCKTMFEQVDSAFQKGMSEHGAAIQ
QRVAAGHTPLAQTLRETINSASSITQSLTSELLDGQRKLLALVASGNPISHNSVLQPTNG
PAPKLPEVDVPLDPLKELSRLISERKFDEAFTMALQRSDLFMVSWLCSQVDLQGLCTLNP
VPLNQWVLLALLQQLACDIGNDTPVKLQWMKAVGMAIQPADQTIAVHVRPIFEQVYGVLA
HQQSLPGISPLEANDIRLMMHVINSVLLSYK
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgccgtcggggaaccctaaccctacctcgagcgcccccttcgagctcgccagc
cttttcaaccctcccgcaaaccccacaaccgtcccgagtcccaccggcatcttcccgggc
gccccgcccggcgctccgatggcctcggccccgccaggaccctactcctacccgccggcg
acgccgcccttccaccgcaacccctacctcccctacccgcccgatcccaccagcgccgcc
cacttcccagccgccgcctacacgaaccctaaccccactccaaaccctctccctgtcccc
aaccccggacccaacccgagcgcccggctcatgcagttgctgggcaacgcccacctcgag
cccacgtcgtcgccttcagacttctcctccggggtgccggcggggatgccgtccgcgccg
ccggcgaggatgccgtccgcgccgccggcgaggatggccagcagcaagatgccccggggc
aggctgctggggcccggggacagggccgtgcacgacgtcgactctcggctgcccggggag
acgcggccgccgcagctggaggtgacgcccatcaccaagtacacgtccgacccggggttg
gtgctgggccggcagatcgctgtgaaccggaactacatcgtgtacggcctcaagatgggc
aacatacgcgtgctcaacatcaacaccgcgctccgctcgctcctccgtgggcacacacag
agggtgacagacatggctttctttgcagaagatgtccatcgtttagcaagtgcaagtgtg
gatgggcgtatatatgtctggaagattgacgagggaccagatgatgaaaataaaccacag
atcacaggaaagattgaaattgccatccagataggagatgctgaaatttaccatccaaga
atatgctggcactcccataagcaagaaattctgtttattggaattgggaactgcgtctta
agaatagatacaactaaagtgggaagaggaagagacttcaatgtagaagagcctcttaaa
tgcacacttgacaagctgattgatggtgtgtacttggttggtaaacatgacggggatgtc
actgatctgtctttatctcaatggatgactacccgtctggcttcagcatcaaaagatggc
acggtaaaaatctgggatgatcgcagagcattgcctctatctgtgattaaaccacatgat
ggtaaagctgtttactcagtttctttccttacggcacctgagcaaccaaatcatataaat
cttgttacagcgggccctctcaatcgagaagttaaaatctgggcttcctctgataaggaa
ggttggttgttgccaagtgagtctgagacttggagatgcactcaagctctggaacttgtg
agttctctggaacataagcacgaggaagcatttttcaaccaagtagcagtgttgccacaa
gctagccttattttgcttgcgaatgccaaaaagaatgctatatatgctgtccatgttgaa
tatggcccagatcctgtttctactcggttggactatatagcggatttcacagttgcaatg
cctattttaagtctgacgggaacatacggaagccaaccagatggtgaacaagtcgtgcaa
gtatattgtgtccagacaatggctattcagcagtatggtctggaggtatcactctgtttg
cctcctacagctgataatactagtcttggtagggatccggttctttcacatgtatatgac
agacctctagaagtggcatcggtggagtcatcctcaggaaccaaaccattgagtgatcat
cagggcacagatgctgatactactgctcatgttccatccttgactcctacatcaaacatg
aataatgctggatctagtgccgatccttcaaaaggtccatctcttggtgatcatgacggg
gatcagtcatcttttgattattcgagtaagaaagtgatcaatggtgacggtacaagtggg
caaggagcatttggcagggaggatagcgtcgggaaggaagacccaacaggccaaggtgag
gctacagtttcggatgctcactccacgtttaacggcagagtgaaagccacacacttgatt
accccatctgaaattatttcaggtgtgatcccatctgctgaaacaactgcgaaaggcagc
ccacataatgtagaagtggagtcaaaacatgtggttgagaaaaaaccagatcaaaatgtt
aaatttgaggctgctaaggagacccaaattgttcatgagaaaatggagagactgaacatg
tcttcggagcgatctgtagagtcaatcagtgaacggtcagtaacaactgacaagtacaac
gtggacgacttccaaagatcagatcccatgctttcgaaacaacattccggtgctggggat
ggaaatgttcaaagtagaacaactgaagttcctgagaaaactgatgtctctgttgcttca
aggaacttgcagttacctgcagctaccatacagaaagttctgcatcctcaggtctctggg
cagttgtctcctcttacaagcagtttcaactctaatgattcctctccaagcaatgcaaac
cctgcaattgattccgcctcgcaagtagctgctattcaaggaacattgcaccagcttatg
gccatgcaaactgacatgcaaaagcagctgaacacaattgtgtctgctcctattgcaaag
gaaggcaaaaggatcgagacatcactagggcgtaacttggagaagtccgtaaaggccaac
gttgatgccatgtgggcccgtttccaggaggaaaatgcaaggcatgaaaaggctgagaaa
gagcgaacacagcagtttgctactctaatcacaacctctataaacaaggatattcctgct
atgctggagaagtcattgaagaaagaaatatcttcactgggaaccaatgttgcacggaca
acagtacctatcattgagaagtccttgtcttctgctgtttctgattcacttcagaaagtt
ctcggtgaaaaggtggtgaatcagctggataagtctataagtacgaaacttgaagctaca
gtgaccaagcagatccaaacacagttccatacatcagttaggcaggctcttcaggattct
ttacggtcaagctttgagtcatcggttatcccagcatttgaacaatcttgtaaaacaatg
ttcgagcaagtggacagtgcattccagaaaggtatgtccgagcatggtgctgctatccag
cagcgggtcgcagcaggacatactccactggcacaaacactaagggaaacaatcaattca
gcatcatcaattacacagagtcttacatcagagctacttgatggccagcgcaagcttttg
gcactagttgcatcggggaacccaatatcacataatagtgttttgcagcctactaatggt
ccagcgcctaagctccctgaggttgatgttccacttgacccgctgaaggagcttagcaga
ctaatatctgagcgtaaatttgacgaagcgtttacaatggctcttcaaagaagtgatctc
ttcatggtgtcttggttatgctctcaggttgatttgcaagggttgtgtacgctgaacccg
gtgcctctaaaccaatgggtgcttctagcccttctccagcagctagcatgcgacataggc
aacgacacccccgtgaagcttcagtggatgaaggccgtcggcatggcgatccaaccagca
gatcagacgattgccgtccatgtgaggccgatattcgagcaggtctatggcgtgttggcc
caccagcagtcgttgccgggaatcagtccgctggaagcaaacgacatccgcctgatgatg
catgtgatcaactcggtgctgctgagctacaagtaa
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