Lolium perenne (perennial ryegrass): 127317876
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Entry
127317876 CDS
T08650
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127317876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lper03041
]
127317876
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127317876
Spliceosome [BR:
lper03041
]
Complex C
Other components
Step II factors
127317876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND_NTPase5
AAA_30
DUF4606
nSTAND3
ResIII
SLFN-g3_helicase
AAA_16
FtsK_SpoIIIE
T2SSE
NB-ARC
Motif
Other DBs
NCBI-GeneID:
127317876
NCBI-ProteinID:
XP_051204436
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All DBs
Position
7:33416268..33429742
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AA seq
696 aa
AA seq
DB search
MPSFSSGVSPQKQQHNARRKQLIRQQRKSLPIASVEKRLVEEVRTNDTLIVVGETGSGKT
TQLPQFLYDAGFCQDGKVIGITQPRRVAAVTVAKRVAEECNDQLGRKVGYSIRFDDSTSN
ATRIKYMTDGLLLREALLDPLLSKYSVIVVDEAHERTVHTDVLLGLLKKVQKSRSLCSNN
NGETLSDRQDPQSSSLKASQGIKFAPLKLIIMSASLDAKCFSDYFGGAKAVHIQGRQYPV
DTLYTYQPESDYLDATLVTIFQIHLEEGPGDILAFLTGQEEIESLERLIQERARLLPPDS
SRIWITPIYSSLPSEQQMNAFKPAPSGNRKVVLATNIAETSVTIPGIKYVIDPGMVKARA
YNPVTGMESLIIIPVSKAQALQRSGRAGREGPGKCFRLFQECEFDKLAESTVPEIKRCNL
ANVVLQLKALGIDDIIGFDFMEKPSRTSILKSLEQLILLGALTDDYKLSDPVGKQMARLP
LDPMYSKALIVSSEFKCLEEMLIVVSMLSVESIFFTPREKLEEARAARKSFESSEGDHIT
LVNVFRAAAECLEKSKNANAKEKTMEKALNRWCWENFINYRSLRHARDVHSQIQGHVQQM
GLNLSSCGDDMVQFRRCLTAAFFLNAAMRQPDGSFRAIATGQSVQMHPSSVLFRTKPDCV
IFNELVRTTQNYVKNLTRIDPLWLAELAPQYYATED
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccttctcgtccggcgtttctccgcagaagcagcagcataacgcgcggaggaag
cagctgattcgccagcagaggaagtcgcttcctatagcgtcagtggagaaacggcttgtt
gaggaggtgaggacgaatgacacgctcatcgttgtcggagagaccgggagtggcaaaacg
acccagctgccacagtttttgtatgacgctgggttttgtcaggatggaaaagtcattggc
atcacccagcctcgaagagttgcagcggttacagtagcaaagcgtgttgctgaggaatgc
aatgaccagttgggcagaaaagttggatactctattagatttgatgattccacatctaac
gcaacaaggatcaagtacatgactgatggtctgcttctaagggaagcacttttggatccg
ctattgtctaagtatagtgttatagtcgttgacgaggcccacgagagaaccgtccataca
gatgtattgctgggtttgttgaaaaaagtgcagaaatcccgatctctttgttccaataac
aatggggagactttgtctgacagacaagaccctcaaagttctagtctgaaggcaagccag
ggaataaaatttgcgcctttaaagctaattattatgagtgccagtttggacgccaagtgt
ttttctgattattttggtggcgctaaagctgtacatattcaagggcggcaataccctgtc
gacacactgtatacttatcagcctgagtcggattatctagatgctacactagttacgata
tttcagatccatttggaggaaggacctggagacattcttgcatttttaacgggtcaagag
gagattgaatcactagagagacttattcaggagcgtgctcgtctacttccaccagatagt
agtaggatatggattacacctatctactcatcgcttccatcagagcagcaaatgaatgct
tttaagccagcaccatctggaaaccgtaaggtggttctagcaacaaatattgcagagact
tctgtaacaatacctggtattaaatatgttattgatcctggcatggtcaaagcgcgtgcc
tacaatcctgtaactggaatggaatccctaatcatcatcccagtttctaaagcacaggct
cttcaaaggagtggccgtgctggacgtgaggggccagggaagtgcttccgtttgttccaa
gaatgtgagtttgataaactggcggaatccactgttcctgagattaaacgatgtaatctt
gcgaatgttgtactacagctcaaagctcttggaatcgatgatatcataggtttcgatttt
atggaaaaaccatcgaggacgtctattttgaaatcattggagcaattgattttactcgga
gctttgactgatgattataagctgtcagatccagttggtaaacaaatggctaggctgcct
ttggatccgatgtactccaaggcattgatagtgtcaagcgaattcaagtgcttggaagaa
atgttgattgttgtttctatgctttcagtggagtcaattttcttcaccccacgcgagaaa
ttagaagaggcaagagctgctaggaagagttttgaaagctcagaaggagaccatataact
ttggtgaatgtatttagagccgctgcagaatgcttggagaagagcaaaaacgcaaatgca
aaagaaaaaacaatggagaaggctttgaacagatggtgctgggagaacttcatcaattac
cgctctctaagacatgctcgtgatgttcacagtcaaattcagggccatgtccaacagatg
gggcttaacctgtcatcatgtggagatgacatggttcagttccggagatgcctcactgct
gctttcttcctcaacgcagcgatgcggcagccagatggatcattcagggctattgcaact
ggccagagtgtgcagatgcatccttcttctgtgctcttccggaccaagccggactgtgtc
atcttcaacgagcttgtccggacgacccagaattacgtgaagaacctgacgcggatcgac
cccttgtggctggctgaactcgccccacaatactacgcaacagaagactag
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