Lolium perenne (perennial ryegrass): 127318681
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Entry
127318681 CDS
T08650
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127318681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127318681
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127318681
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127318681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
127318681
NCBI-ProteinID:
XP_051205126
LinkDB
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Position
1:complement(198726431..198735104)
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AA seq
612 aa
AA seq
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MSGSLNSNISGDSTGRPFTSTFSGQSGSFPGFHHSGLHNIHGNLNLASLAPRNTSLSGIP
SPGVQQPGGSISGNRFPSNNLPASMSQIPHGHSGISNRGGMNVGGNPVFSSSMNAIGGSG
QGLSSSLNVGNRNSAPGLAASSVLGNLGPRITNSVGNIVGGSSIGRSISSAGLSMPGIAS
RINSSGNSGSGALNIPGSNRMSSMHQASPQFMNILGSSYPTPGGTLSQNQVQAGNTSFGS
SGMLHDGNPGDNSPFDINDFPQLTGRPNSAGSGQGQYGSLRKQGVSVNAIVQQNQEFSIQ
NEDFPALPGYKGSSSDYGMDLHHKDHLHENANIMQGQHYPMGRSSGFNLGGSYPPRQQHQ
QSTTPVQNSLDNIGIRPINSPNPSSNSGSYEQLIQQYHQPQTQNSLRSQTSSGPQSYKDQ
SLKSVQGTQTAPDPYSLLALLNLIRSKEPGPTSLALGLDLTTLGLNLNSQDSLYKTFGSP
WSNEPAKGEPDFQIPACYSAEQPPALQPFNFPKFQIMTLFYIFYSMPKDAAQLYAANELY
NKGWFYHKEYRVWLTRNPSVAPAAKNPHGERGSYLFFDPNIWETVQKDNFVLQYDSVEKR
PPPPSASQNVRL
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggatcactgaattcaaatattagtggggattcaacaggaaggccattcacatca
accttttctggtcagtctggatcgtttcctggtttccatcactctggcttgcataatatc
catggaaatctcaatcttgcatcactagcaccaaggaatacttcattgtccggtattcca
tccccaggtgttcaacaacctgggggtagtatttctggtaaccggtttccctcaaataat
cttccagcgtccatgtctcagattcctcatggtcattctggtatcagcaacagaggaggt
atgaatgttggggggaaccctgtatttagtagtagcatgaatgctattggtggttcagga
caaggtttatcctcaagcctgaatgttggtaaccgaaattctgctcctgggttggcagct
tcttcagttttggggaatttaggcccacggataacaaattctgtgggcaatatagtgggt
ggcagcagtattggcagaagcataagctccgcaggactgtctatgcctggtattgcatcc
cgtatcaattcgagtggcaactctggaagtggggctcttaatatcccaggatccaaccga
atgagtagtatgcatcaagcatcaccacagttcatgaacattcttgggagctcttatcct
acacctggagggacgctttctcagaaccaagtgcaggcaggaaacacctcttttggttct
tcaggaatgctacatgatggaaaccctggtgacaattctccttttgatataaatgatttt
ccccaattaacggggcgtcctaattctgctggaagtggtcaagggcaatatgggtcactg
cgaaagcaaggagtaagtgtaaatgccattgtgcaacaaaaccaggagttcagcattcag
aatgaagactttccagctttaccaggatataaaggtagttcgtcagattatggtatggat
ttgcatcacaaggaccaccttcatgagaatgcaaatattatgcaaggacaacattatcct
atgggtagatcatctggctttaatttgggaggtagttatccaccccgacagcaacatcag
cagagcactactccggttcaaaacagccttgataatatcgggataaggccgataaattct
ccaaatccgtcttctaattctgggtcttatgagcaacttatccagcaataccatcaaccg
cagactcagaattcacttaggtcgcagacctcttcaggcccacagtcatacaaggatcag
agtctaaagtctgttcagggaacacagaccgcgccagacccatacagtttacttgcattg
ttgaatttaataagatcgaaagagcctgggcccacatctctcgccttagggcttgatttg
acaacactagggttgaatttgaactctcaagatagtctttacaagacgtttggctctcca
tggtcaaatgagccagctaaaggagaacctgattttcagatccctgcttgttactctgct
gaacagcctccagcactacaaccattcaattttccgaagtttcagatcatgacactattc
tacatcttctacagtatgccgaaggatgctgctcagttatatgctgcaaatgaactatat
aacaaagggtggttctaccacaaagagtaccgtgtgtggctcacaagaaatccaagtgtg
gcacctgctgcgaaaaatccacatggcgaacgagggtcctaccttttttttgatccaaat
atttgggagacagttcagaaggacaactttgttctccaatatgactctgtagagaagaga
cctccccccccttcggccagccaaaatgttagattataa
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