Lolium perenne (perennial ryegrass): 127319717
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Entry
127319717 CDS
T08650
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127319717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127319717
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127319717
U7-dependent histone pre-mRNA processing factors
127319717
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
127319717
NCBI-ProteinID:
XP_051205649
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Position
1:complement(203118888..203126143)
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AA seq
738 aa
AA seq
DB search
MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDHCDPAVLQPLARVAPTIDAVLL
SHPDMMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDYFLSRWQVADFDLFTLDDID
AAFQNVVRLKYSQNHLLKDKGEGIVIAPHVSGHLLGGTVWKITKDGEDVIYAVDFNHRKE
RHLNGTALGSFVRPAVLITDAYNALNNQVYKRQQDQDFIDSMVKVLSNGGSVLLPVDTAG
RVLELLLIMEQYWAQRHLVYPIYFLTNVSTSTIDFVKSFLEWMSDSISKSFEHTRDNAFL
LRYVSLIINKEELEKLGDAPKVVLASMSSLEVGFSHDIFVDMANEAKNLVLFTEKGQFGT
LARMLQVDPPPKAVKVTMSKRIPLVGDELKAYEEEQERVKKEEALKASLSKEEELKASQG
SNAKASAPMVVDASLSCKSSNAGSNVGGSVDILIDGFVPPATSVAPMFPFFENTADWDDF
GEVINPDDYMMKQDEMDNNLMLGAGDGMDGKLDEGSARLLLDSAPSKVISNEMTVQVKCS
LAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCAKNSDLHVYAPQLEET
IDVTSDLCAYKVQLSEKFMSNVISKKLGEHEIAWVDAEVGKVDEKLTLLPPSSTPSAHKP
VLVGDLKLADFKQFLANKGLQVEFSGGALRCGEYITVRKIGDSNQKGSTGSQQIVIEGPL
CEDYYKIRELLYSQFFLL
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atggggacgtcggtgcaggtgacgccgctgagcggcgcgtacggcgagggccccctctgc
tacctgctcgccgtcgacggcttccgcttcctcctcgactgcggctggaccgaccactgc
gaccccgccgtgctccagcccctcgcaagggttgccccaacaatagatgctgttcttctg
tctcaccctgacatgatgcatctgggagctttgccctatgctatgaagcatcttggatta
tctgcaccagtatatgccacagaacctgtgtttaggcttggacttctgaccatgtatgat
tatttcctatctcgatggcaagttgcagactttgacttgttcactttggatgatatagat
gctgcattccagaatgtcgtgaggctaaaatactcacaaaaccaccttcttaaagataaa
ggtgaaggaatagtgattgcaccgcatgtgtctgggcatctgttggggggtacagtatgg
aagataacaaaagatggggaagacgtcatctatgcagttgatttcaaccaccgaaaagag
agacatttgaatggtactgcccttggatcttttgtacggccagctgttttgattactgat
gcttacaatgccttgaacaatcaagtctacaaaaggcagcaggatcaagatttcattgat
tcaatggtgaaagttctatcaaatggtggtagcgtgttactgcctgttgatacagccggt
agagtgctagaacttcttttaataatggagcagtactgggctcaacgacatttggtctat
cctatctactttctgacaaatgtttctacaagtactattgattttgtcaagagttttctt
gaatggatgagcgattcaatctcaaagtcttttgaacacactagagataatgcctttcta
ttaagatatgtttcactgataattaacaaagaagagctggagaaactgggagatgctcca
aaggtggttctagcgtccatgtcaagcttggaggttggcttttctcatgacatatttgtt
gatatggcaaatgaagcaaaaaacctggtgctttttactgagaaaggacagtttgggact
cttgctcgcatgcttcaagtggatccaccccccaaagctgtaaaagtgactatgagcaaa
cgaattcctttagttggtgatgagctgaaagcttatgaagaggaacaagaacgggtaaaa
aaggaagaagcgctaaaggctagcctcagcaaggaggaggagctaaaggcttctcaggga
tcaaatgcaaaggcttctgctcccatggtcgtcgatgcaagcttgtcttgtaaatcatcc
aatgctggctcaaatgttggcgggagtgtggatattctaattgatggatttgtccctccg
gcgaccagtgtcgctcctatgtttcctttctttgaaaatactgctgactgggatgacttc
ggtgaggttatcaatcctgatgattatatgatgaaacaagatgaaatggataataatttg
atgctcggtgctggagatggtatggatggtaagcttgatgagggatcagcacgcctgctc
cttgattcggcaccatcaaaagtgatttcaaatgagatgacagtgcaagtgaagtgctca
ttggcatatatggactttgaaggtcggtccgatggccgttccgtaaaatctgttattgct
catgtggccccactgaaacttgttttggtgcatggatctgcagaagctactgaacatttg
aaaatgcattgtgcaaagaactcagacctgcatgtttatgctcctcagttggaagaaaca
attgatgtaacatcagatttatgtgcttacaaggtacaactttcagagaagttcatgagc
aatgtcatatctaagaagttaggtgagcatgaaattgcgtgggttgatgcagaagttggg
aaagtggacgagaagcttactttgctaccaccctcgtcaactccatcagcccataaacca
gttcttgtcggtgatctgaaattggctgatttcaagcaattccttgcaaataaaggttta
caggtcgagttttctgggggtgctctacgttgtggcgagtacatcacggtgcgcaagatt
ggcgattctaaccaaaagggcagcacgggttctcagcaaatcgtgatcgagggcccgctg
tgcgaggactactacaagatacgcgagctcctctactcgcagttcttcttgctgtaa
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