Lolium perenne (perennial ryegrass): 127325727
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Entry
127325727 CDS
T08650
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03013
Nucleocytoplasmic transport
lper03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127325727
03015 mRNA surveillance pathway
127325727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127325727
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127325727
mRNA cycle factors
P-body specific factors
127325727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
PsiA
HILPDA
Motif
Other DBs
NCBI-GeneID:
127325727
NCBI-ProteinID:
XP_051208501
LinkDB
All DBs
Position
6:complement(165488844..165500753)
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AA seq
1181 aa
AA seq
DB search
MENSQSENLTDTKKDDEARQSKQEDEEARIEEYKRLIDQKTALRRSNQNPERPDVNYLRT
LDSSIKRNTTVIKKLKTINDEQKDVLMDELKSVNLSKFVSEAVSYICEAKLRSADIQAAV
QVCSLLHQRYKDFSPCLIQGLLKVFFPGKSGEDLDPDKNSRAMKKRSTMKLLVELYFVGI
VEDASIFVNIMKDLTSLEHLKDREVTQTNLSLLSSFVRQGRLFIGLQSHGHESNDEFFKD
LNVTADQKKFFKKVLNSYYDAVSELLQSENASLRLMEAENAKVLSAKGELSDENTASYEK
LRKSFDQLLRGVSSLAEAIDLQPPVLPDDGNTTRVTTGSDVTPSPGKEPSILEPIWDDDD
TKTFYESLPDLRAFVPAVLLGEAEQKVNEQHAKGREQSSESITEQETEVHDIAQTSSAED
QLEGKADDVPKDSEDKDKDKGKEAEKSKEKDLDRKTEKDKEKVRALDGGNLDNLLQRLPG
CVSRDLIDQLTVEFCYLNSKASRKKLARALFSVPRTSLELLPYYSRLVATLSSCMKDVPS
MLLAMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKIAPAALVFSCLKACLDDFSHH
NIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP
ERSARVSKVRPPLYQYIRKLLFSDLDKSSVEHVLRQLRKLPWVECQQYLVKCFLKVHKGK
YSQVHLIALLTAGLSRYHDDFAVAVVDEVLEEIRVGLELNDYAMQQRRLAHMRFLGELYS
YKHIDSSVVFETLYLIIVFGHGTNEQDVLDPPEDCFRIRLIITLLQTCGHYFTRGSSKRK
LDKFLLHFQRYIIMKGPLPLDIEFDIQDLFADLRPNMTRYSSIDELNSALAELEEHERAA
SVEKPESERHSDNESQKKQPHDAASNGAQGNGKDHREGADSESYSDGGSVDGREDEEDLL
SEEKSNDASENEGDDEDDGMPVGSDEDEAVEVRQKVVQIDLKEQEDFDRELKALLHESLE
SRKSEVRSRSTLNMKVPMNVLESSKDPRATESESGEETVDEEGGNAGGGSKVRVKVLMKK
GHKQQTRQMFIPSDSALVQSTKQQEAAELEEKQNIKRRILEYNEREEEEMNGGSSQMGNW
GQGGSNTGSSIRSGGRGNWDGWIRGGARRAGGFYQGYGRRR
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggagaacagccagagcgagaaccttacagacactaagaaagacgacgaggcacgccaa
agcaaacaggaagatgaggaggctcgtattgaagaatacaaaagacttatagatcaaaag
actgcccttcgccgaagcaaccaaaatcctgaaagaccagatgtaaactacctgaggact
cttgactcaagcattaaacgaaatacaacagtgataaagaagctcaaaacaataaatgat
gagcaaaaggatgtattaatggatgagttgaaaagtgtgaacttgagcaaatttgtcagt
gaagcagtttcttatatttgcgaagctaaacttcgctctgctgatatacaagctgcagtt
caggtttgctcattgcttcatcaaagatacaaggacttctcaccttgtcttatacaaggt
ctactgaaggtcttctttcctggtaaatctggcgaggatctggatccagacaaaaactcg
agagctatgaagaaaagaagcaccatgaagcttctggttgaactttactttgttggaatt
gttgaagatgctagtatctttgtaaacattatgaaagaccttacatcactggagcatttg
aaggaccgggaagtaactcagacaaatctgtctcttctctcttcctttgttcgtcaaggg
aggttatttataggattacagtctcatggccacgagtcaaatgatgagttctttaaggac
ctaaatgttactgctgatcagaagaagttcttcaagaaagtgttgaattcttactatgat
gctgtgtctgaactactgcaatcagaaaatgcgtctcttcgtctgatggaggcagagaat
gcaaaagttttaagtgccaaaggcgaactaagtgatgagaacacagcgtcatatgagaaa
ctccggaagtcttttgatcagttactacgtggtgtatcctcgttagctgaagctattgac
ttgcagcctccagtgctgccagatgatgggaatacaacaagggttactacaggaagtgat
gtcaccccttctcccggaaaagaaccatctatactcgaacctatttgggatgatgatgat
accaagactttttatgaatctttacctgatctaagagcatttgtgcccgctgtgttactg
ggagaggctgaacaaaaggtgaatgagcaacacgctaagggccgtgaacagtctagtgag
tccatcactgaacaagagactgaagtacatgacattgctcaaacttcttctgctgaagat
caactagagggaaaggcagatgatgtaccgaaggatagtgaggacaaagataaagataag
ggaaaagaagcagaaaaatccaaagagaaggatttagacaggaaaactgaaaaagataaa
gagaaagtaagagccttggatggtggaaatttggataacctgctacagaggctgccagga
tgtgttagccgtgatctcattgatcaattgacggttgagttttgctacctaaattctaaa
gcaagtcggaagaaacttgcgagggccttattcagtgttccaaggacttctctagagctt
ttaccttactattctcggttggttgccacattgtcatcatgtatgaaagatgtccctagt
atgcttcttgccatgctcgaagaggagttcaacttcttaataaataagaaggatcaaatc
aacattgaaacaaaaataaaaaacataagatttattggtgagctttgcaaattcaaaatt
gcaccggcagctcttgtttttagttgtttgaaggcatgtctggatgatttcagtcatcat
aacattgatgtggcctgcaaccttctcgagacatgtggacgtttcttatatcgttcacct
gaaactactattcgcatggctaacatgctggagatactgatgcgattgaaaaatgttaag
aatttggatccgcgccacagtacacttgtagaaaatgcctactacctttgtaaacctcct
gaaagatctgccagagtttcaaaagttcgtccacctctgtatcaatacataaggaagttg
cttttctcagatcttgacaaatcgagtgttgagcatgttcttcgccagttgcgcaagcta
ccttgggtagagtgtcagcaataccttgtaaagtgctttctaaaggttcacaaagggaag
tacagccaagttcatctaattgctcttctcactgctgggcttagtcgttatcatgacgac
tttgctgttgcagtggtagatgaggtcttagaagagataagggttgggctggagttgaat
gactatgcgatgcagcaaaggcgacttgcgcatatgagatttcttggagagctgtacagc
tacaagcatattgactcctcagttgtatttgagacattatacctcatcattgtgtttggt
catggaactaatgaacaagatgtgttggatccaccagaagattgcttcaggatcaggttg
atcataacacttctgcagacttgtggccactatttcactaggggttcatccaaaagaaag
cttgacaagttcttgttacattttcaaagatacattattatgaaaggccccttaccgctt
gacatagaatttgacattcaggatttgtttgctgatctacgaccaaacatgaccagatat
tcatcaatagatgaacttaactccgcattggccgagcttgaagaacacgagcgtgcagcc
tcagtagagaagcctgaaagtgaaaggcactcggacaacgaatctcagaagaagcagcca
catgatgctgcttcgaatggagcccagggaaatggaaaggatcacagagagggtgcagat
agtgagagctattcagatggtggcagcgttgatggtcgtgaagatgaggaagatcttctg
tctgaggagaaatcaaatgatgcatcagagaatgaaggtgacgatgaggacgatgggatg
cctgttggttctgatgaagatgaggctgttgaggttagacaaaaggtggtgcagattgat
cttaaggaacaagaagactttgaccgtgagctgaaagcccttctgcatgagagcttggag
tcacgtaagtcggaggtgcgttccaggtccactttgaacatgaaggtaccaatgaatgtg
cttgaaagttcaaaggacccgagagccacggagtctgagagtggagaagaaactgtggat
gaagagggtggtaatgctggtggtggcagcaaggtacgtgttaaggtgctaatgaagaaa
gggcacaaacaacagacaaggcagatgttcatccccagtgactctgctctggtacagagc
acaaagcagcaagaagctgccgagcttgaggagaagcaaaacattaagcggaggatcctt
gaatacaatgagagggaggaggaagaaatgaatggcgggtcgtcacaaatggggaactgg
ggccaaggagggagcaacaccggcagcagtattagatcaggtgggcggggcaattgggat
ggttggatcagaggaggtgcccgccgtgctggtggtttctaccagggatatggcaggaga
agatga
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