Lolium perenne (perennial ryegrass): 127326313
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Entry
127326313 CDS
T08650
Name
(RefSeq) zinc finger CCCH domain-containing protein 27
KO
K13192
RNA-binding protein 26
Organism
lper
Lolium perenne (perennial ryegrass)
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lper01009
]
127326313
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127326313
03041 Spliceosome [BR:
lper03041
]
127326313
Protein phosphatases and associated proteins [BR:
lper01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127326313
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
127326313
Spliceosome [BR:
lper03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
127326313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
zf_CCCH_4
CCDC28
RNA_bind
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
127326313
NCBI-ProteinID:
XP_051209130
LinkDB
All DBs
Position
5:5512358..5524892
Genome browser
AA seq
922 aa
AA seq
DB search
MQSCFSADFIILKMHKESTAPGLDADKIEVPSPKEESNSTNSEAATDTENFEISDDDDDD
RNHKHRRKEAMPQSFGESTEEQAAGRPLKRRPMISGNGQPFGGADSRGEAQKDFIPKFKR
RLGPGAHSRGGRMNQSFHSASAATRPPMTRGRGRNGAPWTQHDPRFNTLDMMDFASHMAS
QGPPPHPSLFMGAPMPSSGSAQNGSWGPHGFMPGMPNGMLDPFHPHGMQGPIQPAMSPLV
DLGMPRQRCRDFEERGFCLRGDMCSMEHGVNRIVVEDMQSLSQFNLPVSAPNAPGLGIQS
EAVTAHVNLTNLGGSKGVTAKDIKSGVADDALKLNGSTGSAVVNTDVYDPDQPLWNNENP
EASCAGFAHTNDGVWNAETSSYEAGWEHANQGFAADGSKNSKSSVWGRIASKKKSGPSKT
ANTTSTSATGNKRSDYYDDMAPSTIQLKPASTKDTNGQSNSRMLGDVGRQSNRAPHKASR
TLYVNGIPQESNRWEALLSHFQKFGQVIDIYVPANSEKAFVQFSKREEAEAALKAPDAVM
GNRFIKLWWANRDRITEEGEGRVSTKPVLTNSALAQPSSSNRGNDLQSATPRASSGSSAS
GPGVGPKTLPANSITSVPPAPKRQESMELLEELRKKQDMLAQKRAELRQQLEAYAKQKNS
GNPVKQTETSGKEVGPNAAGKVVDIRSMNTGTEGLQEVASTLEKKISGDLALSSPKYAPT
STQKPAVAVKQTSPLVAPPQNRFKLDNRTTSFRILPPLPPEIANESVLKDHFAAFGELSS
VVLEDTEAHNHDTTLPSLSCSACVTYTTRQSAEKAFITGKSCKGHMLRFMWLTASPGSNN
QSRFQKTSSLVGAAESPSPVAKISRIVTSGTSVIPHSESIPTAESSERFPVEISKVSSSS
VECPPENDSTRNPLLTDPYVPQ
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagttgcttttctgcggattttataatcttgaagatgcacaaagagtctacagct
ccaggactggatgctgacaaaatagaagttccttcaccaaaggaagaaagtaattccaca
aattctgaagctgctacagataccgaaaactttgaaattagcgacgatgacgacgatgat
cgtaatcacaagcaccgaagaaaagaggctatgcctcaatcttttggtgagagtactgag
gagcaagctgcagggaggcctttgaaaagaaggcccatgatttctggtaatggacagcca
tttggtggagctgattcacgtggggaagcacagaaggacttcataccaaaattcaagagg
cgtcttggaccaggagctcacagtcggggaggtagaatgaaccaatctttccattcagct
tcggctgccactcgccctcctatgacacggggaagaggacggaatggtgcaccctggact
cagcatgacccaagatttaacacacttgacatgatggattttgcatcacacatggcgtca
caaggaccgcctccacatcctagcttatttatgggtgctccaatgccgagtagtggtagt
gctcaaaatggttcatggggtccacatggttttatgcctggaatgcctaatggaatgctg
gatccatttcacccacatggaatgcagggccctattcagcctgcaatgtcacctttagtt
gatcttggcatgcctcgtcaacgttgtagagacttcgaggagcgtggattttgcttgaga
ggggatatgtgctccatggagcatggagtaaatagaattgttgttgaagatatgcagagt
ctatcacagttcaatcttccagtctcagctccaaatgctccgggactaggaatccaaagt
gaggcagtaactgctcatgttaacttaacaaacctaggaggcagtaaaggtgttaccgcg
aaagatatcaaatctggtgtggcagatgatgcattaaagctaaatggaagcactggttca
gctgttgttaacactgatgtatatgatcctgatcagcctctgtggaacaatgaaaatcct
gaagcatcctgtgctggttttgcacatactaatgatggagtatggaatgctgagacctca
agctatgaagcagggtgggagcatgcaaaccagggttttgcagctgatggttcaaagaat
tcaaagtcttctgtttgggggagaatagcatcaaagaaaaaatcaggacctagtaaaaca
gctaatactacttcgacaagtgccactggaaacaaaagaagtgactactatgatgatatg
gctcctagcaccatccaattaaagccggcttctactaaggatactaatggtcaatctaat
tcaagaatgcttggagatgtgggccggcaaagtaatagagctcctcacaaagcatctcgc
acactttatgtgaatggcattccgcaggaaagcaatagatgggaggcccttctttcgcac
ttccaaaaatttggtcaagtaatagatatctatgttccagctaacagtgagaaagctttt
gtccagttctctaaaagggaagaagcagaagctgccctaaaagctccagatgctgtgatg
ggaaaccgttttataaagctatggtgggctaacagggacaggattactgaggagggagag
ggtagagtctctacaaaacctgtgctgacaaattcggctctagctcaaccatcttcatcc
aacagaggaaacgatcttcaatctgcaactccaagggccagttctggatcttctgcatca
ggtcctggtgtaggtcctaaaacgttgcctgcaaacagtataacatcagtacctcctgct
cccaaaaggcaagaaagtatggaactcctggaagaactccgtaaaaaacaggatatgtta
gctcagaagcgggctgagttacgccagcagttagaggcatatgcgaaacaaaaaaattca
ggaaatccagtaaaacagacagagactagtggaaaagaagttgggccaaatgctgctggg
aaagtggtagatataaggtccatgaacactgggacagaagggctgcaagaggttgctagt
acactggaaaagaaaatttctggggatttggctttatcttccccaaaatatgctccaaca
tccacacagaaaccagctgtagctgttaagcagacatctcctctggtagcaccacctcag
aataggtttaagctcgacaaccgcaccacgtcgtttaggatccttcctcctttgccacct
gaaattgcaaatgaatctgtcttgaaagatcattttgcagcattcggggagctctcatct
gttgttctagaagacactgaagcccacaaccatgatacaaccttgccttctctgagttgc
tcagcttgtgtgacctacacaacgcgacaatctgctgagaaagcatttattactggcaaa
tcttgtaaagggcatatgctacgatttatgtggttgacggcttctcctggctcaaataac
caatcaagatttcagaaaacatcaagtcttgttggggcagccgagtccccaagccctgtt
gcgaaaatctcacgcattgtcacatctggtacatcagtcattcctcatagtgaatccatt
ccaactgcagaaagttcagagagatttcctgttgagatttccaaggtatcatcttctagt
gttgagtgcccacctgaaaatgattccacaaggaatcctctccttacagacccttacgtt
ccacaatga
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