Lolium perenne (perennial ryegrass): 127327540
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Entry
127327540 CDS
T08650
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03420
Nucleotide excision repair
lper04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
127327540
09124 Replication and repair
03420 Nucleotide excision repair
127327540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lper04121
]
127327540
03400 DNA repair and recombination proteins [BR:
lper03400
]
127327540
Ubiquitin system [BR:
lper04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
127327540
DNA repair and recombination proteins [BR:
lper03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
127327540
TCR (transcription coupled repair) factors
Cul4-CSA complex
127327540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
127327540
NCBI-ProteinID:
XP_051210278
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All DBs
Position
1:complement(247703519..247712005)
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AA seq
1099 aa
AA seq
DB search
MSKWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDAPIYG
RIATIELFRPHNETQDFIFIATERCKFCVLKWDGEKSELLTISMGDVSDPLGCPTDNGQI
GIVDPDCRLIGLHLYYGLFKVILFDNKGLLMEAFDIRLEELPVLDIKFLYGCVKPTIVVL
YQDNSDARHVKTYEIALKDKDFVEGPWSQNNLDNGAGLLIPVLAPLGGVIIIGEETIVYC
NGNSAFKALPIKQSIIRAYGRVDPDGPRYLLGDNTGTLHLLVLTQEEERVTGLKIEHLGE
TSIASSISYLHNGVVYVGSRFGDSQLVKLNLLPDATGSFVEVLERYANLGPIVDFCVVDL
DRQGQGQVVTCSGAFKDGSIRVIRNGIGINEQASVELQGISGLWSLKSSFSDPYDMYLVV
SFISETRFMAMNIEGVLEETEIEGFDAQTQTLFCQNGISDLLIQITANSVRLVSCTSREL
VDQWNAPEGFSVNVASANATQVLLAIGGGHVIYLEIRDAKLVEVKHAQLEHDVSCVDLNP
VGENPQYSSLAAIGLWTDISVSIYSLPDLKLIRKENLGGETVPRSVLLCTLERVSYLLCA
LGDGHLFSFLLNASTGELTDRKKVSLGTQPITLRTFSSKGTAHVFASSDRLTVIYSSSKK
LLYSNVNLKGVNHMCPFNTASFPDSLAIAKQSEFSIGTMGYIQNQKLRTIPLNEQPKRIC
HQEQSSTLAVCTSKYLDSGEQSEAHFIRLLDHQTFEFLFTHPLDQYECGCSMISCSFSDD
NKFYYCVGTSYILPDEYEPAKGRILVFAVEDGRLQLIVEKETKGAVYSLNAFNGKLLAAI
NQKVQLYKWMTREDGLHELQSECSYHGHILALYTQTRGNFIVVGDLMKSISLLVYKHEES
AMEELARDYNPNWMTAVEMIDDDIYIGAENSYNLFTVRKNSDAATDEERGRLQVVGEYHL
GEFVNRFCHGSLVMHLPDSEMGQIPTVIFSTINGVIGIIASLPHDQYVFLEKLQATLVKF
IKGVGSLSHEQWRSFYNGKKTLDAHNFLDGDLIESFLDLNRGKMEEVAEAMSVQVEELLQ
RVEELTRLHETMPRHVHKE
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagtggaactacgtcgtcacggcacacaagcccaccagcgtcagccactcctgc
gtcggaaacttcaccggcccgcaccagctcaacctcatcgtcgcgaaatgcacccgcatc
gagatccatctgctcactccacagggccttcagcctatgctagatgcaccgatatacgga
agaatcgcgacgattgagctcttccgtcctcataatgagactcaggacttcattttcatc
gctacggaaagatgcaagttctgtgtcctaaagtgggatggggaaaaatcagagcttctc
accatatccatgggagatgtttctgatccccttggctgccctacggacaatggacagatt
ggaattgttgaccctgactgtaggcttattggtcttcacctctactatggattatttaaa
gttatactgtttgacaacaaaggactgctgatggaagcttttgatatcagactagaagag
cttccagtattggacatcaagtttctgtatggctgtgtcaaacctacaatagttgtcctc
taccaggataacagcgatgcaaggcatgttaagacatatgaaattgcactgaaggacaaa
gacttcgttgagggtccttggtcacagaacaatttggacaatggtgctggtcttttaata
cctgtactggctccacttggtggtgttataattattggtgaggagacaatagtttactgc
aatggcaattctgcattcaaagctttgcccatcaaacaatccatcataagagcttacgga
cgggttgacccagatggtccccgctatttacttggtgataatacaggcactttgcattta
cttgtgcttacccaagaagaagaaagggtaactggtttaaaaattgagcacttgggagag
acttcaattgcatcgtcaatatcgtatcttcataatggtgttgtctatgttggttctcga
tttggtgattcacagctcgtaaagctgaatctcctacctgatgcaactggttcgtttgtt
gaagttcttgaacgatatgcgaatcttggacccattgtggacttctgtgtggttgacctt
gataggcaggggcaaggtcaggtggtcacttgttcaggagcatttaaagatggatcaatt
cgggtgattcgtaatggtattgggattaacgagcaggcttcagtagagctgcaaggaatc
agtggattatggtcattgaaatcttccttcagtgatccgtacgacatgtacctggtggtg
agctttataagcgagacacgattcatggctatgaacatcgaaggtgtattagaagaaacg
gagatagaaggctttgatgcacaaacccagactttgttttgccaaaatggcatcagtgat
ctgcttatacagattactgctaattctgttcggttagtcagttgcacttcccgggagcta
gtggatcaatggaatgcaccagaaggattttcagtcaatgttgcatcagctaatgccacc
caggtcctgttggcaatcggtggtggtcatgttatttacctagagattagggatgctaag
ctggttgaagtgaaacatgcacagctagaacatgacgtctcctgtgttgatttgaaccca
gtcggcgagaacccacagtatagttctctagctgctattgggttatggactgatataagt
gttagtatatattcacttcctgaccttaaattaatcaggaaggagaatttaggtggagaa
acagttcctcggtctgttctgctatgcaccttggaaagggtttcgtatttgctttgtgct
cttggagatggccacctgttcagttttcttttaaatgcaagtacaggtgaactaactgat
agaaagaaggtttctcttggtacccaaccaattacccttcgtacattctcatcgaagggt
acagctcatgtgtttgcttcatctgatagactgactgttatctatagcagcagtaagaag
ctgctgtatagcaatgtcaatttgaaaggagttaatcatatgtgccctttcaatacagcc
tcttttcccgacagccttgcaattgctaaacaaagtgaattttctattggaactatgggc
tatatccaaaaccagaagctccgcacgataccgttgaatgaacaaccaaagcgtatttgc
caccaggaacagtccagtacactggcggtctgcacttccaaatacttagacagtggggag
caaagcgaggcacattttattcgtctgttggatcatcaaactttcgagtttctgtttaca
catccacttgatcaatatgaatgcggttgctccatgattagctgctcattctcagatgat
aataaattctattattgtgtgggaacatcatacattttacctgatgagtacgaaccagca
aagggccggatcctcgtatttgcagttgaagatggaaggttgcaattaattgtagaaaaa
gaaacaaaaggagctgtctattctctaaatgcattcaatgggaaactgttggcagctatc
aatcagaaggtgcaattatataagtggatgacacgggaggatggtttgcatgagctgcaa
tctgagtgcagctatcatggacacatactggccttgtatacccaaacccgtggcaatttc
attgtcgttggagacctgatgaaatcgatatccttgcttgtatacaaacatgaggagagt
gcaatggaagagcttgctagggattacaacccaaactggatgactgcggttgagatgatc
gatgatgatatctacatcggtgcagagaatagctataacctcttcactgtccgtaagaac
agtgatgcggccacagatgaagagaggggcaggcttcaggttgtcggggagtaccacctt
ggagagtttgtgaacaggttctgccacggttcacttgtgatgcatctcccagactctgag
atgggccagatccccacggtcatcttcagcacaataaacggggtcattggcatcatcgcc
tccctgccccatgaccagtatgtgttcctcgagaagctccaggcgaccctggtgaagttc
ataaagggcgtcggcagcctcagccacgagcagtggcggtcgttctacaatggcaagaag
acgttggatgcccacaacttcctggacggtgacctgattgaatcgttcctggaccttaac
agaggcaagatggaggaggtggctgaggcgatgtcggtccaggtggaggagctgctccag
agggtggaagagctgacgagactgcacgaaacgatgccgcgccatgtacataaagaatga
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