Lolium perenne (perennial ryegrass): 127327931
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Entry
127327931 CDS
T08650
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03013
Nucleocytoplasmic transport
lper03015
mRNA surveillance pathway
lper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127327931
09122 Translation
03013 Nucleocytoplasmic transport
127327931
03015 mRNA surveillance pathway
127327931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127327931
03041 Spliceosome [BR:
lper03041
]
127327931
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127327931
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127327931
Spliceosome [BR:
lper03041
]
Complex C
Other components
EJC/TREX
127327931
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127327931
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
127327931
NCBI-ProteinID:
XP_051210711
LinkDB
All DBs
Position
1:269645218..269649919
Genome browser
AA seq
428 aa
AA seq
DB search
MMGEAKEAEVYEEELLDYEEDDDKAVDGAAAAKADVAKKGYVGIHSSGFRDFLLKPELLR
AIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGHVAALV
LCHTRELAYQICNEFERFSKYLSELKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPI
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgatgggagaggccaaggaggccgaggtgtacgaggaggagctcctggactacgaggag
gacgacgacaaggccgtcgacggcgccgccgccgccaaggccgacgtcgccaagaagggc
tacgtcgggatccacagctccggattcagggacttcctgctcaagcccgagctgctcagg
gccatccaggactgcggatttgagcacccgtccgaagtgcaacatgagtgcatccctcaa
gcaatcctcggtatggatgtcatctgccaagcaaagtcagggatggggaagactgctgtt
tttgtcctgtcatctcttcagcaaattgaccctgttgctggtcatgtggcagcacttgta
ctgtgccacacacgagagttggcttaccagatatgcaacgagtttgagaggttcagcaaa
tatctgtctgaattaaaggtggctgtattctatggaggtgttcacataaagaagcacaag
gatttattgaagaatgactgccctcatattgtggtgggcactcctggaaggattcttgct
ctagctagagacaaggacctttctttgaagaatgtgaggcatttcattcttgatgagtgt
gacaagatgctcgagtcacttgacatgaggagggatgtccaggagatcttcaagatgaca
cctcatgataagcaggtcatgatgttttcggcaacactcagcaaggagatccgtccgatt
tgcaagaaatttatgcaagatcctatggaaatttatgttgatgatgaggccaagttgact
cttcatggtcttgtacagcactatataaaattgaccgaggcagagaagaaccgtaaatta
aacgatctcttggatgcccttgatttcaaccaagttgtgatatttgtgaagagcgttagc
agggcagcagagttgaacaagctgctttgcgaatgcaacttccctgcaatcagcatccat
tctggcatgacgcaggaagaaaggttgactcgatacaagaacttcaaggaaggacacaag
aggatcctcgtggccacagatttagtgggcagaggaattgatattgagcgtgtcaacatt
gtgataaactacgacatgcctgattcagctgatacatacctgcacagggttggaagggct
ggccgttttggcaccaaggggcttgctataactttcgtttcctcggcctcggactctgat
gttcttaaccaagtgcaagagaggttcgaggttgacatcaaggagctgcctgagcagatt
gacacttcaacatacatgccgtcataa
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