Lolium perenne (perennial ryegrass): 127332138
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Entry
127332138 CDS
T08650
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127332138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lper03041
]
127332138
Spliceosome [BR:
lper03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
127332138
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
PRP4
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_Nup120_160
WD_LRWD1
Beta-prop_WDR75_2nd
eIF2A
Beta-prop_SCAP
Beta-prop_NWD2_C
Beta-prop_NUP159_NUP214
WD40_like
Motif
Other DBs
NCBI-GeneID:
127332138
NCBI-ProteinID:
XP_051214355
LinkDB
All DBs
Position
4:259263979..259268303
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AA seq
519 aa
AA seq
DB search
MENPRPQAPGFTPPMAPLPLPLHPPIAPIPGAPPRAPASTSAAAAAAESDDDDEVDYEVS
DDHRAARERHERAVQELLQRRRAYAMAVPTNDSAVRARLRRLGEPITLFGEREMERRDRL
RGLMVRLEADGQVDRLLRAQEDDQGAAANDEDDAEQIQYPFFTEGTKELLQARVDIAQYS
LPRAKARVDRAKRRLADPDEDPDAEADLVVKQAGEFVLECSEIGDDRPLTGCSFSRDASM
LATSSWSGIIKVWSMPQITKIATLKGHTERATDVAFSPVDNVLATASADRTAKLWNSDGS
LLMSFNGHLDRLARLAFHPSGKYLGTASFDKTWRLWDINTGTELLLQEGHSRSVYGVSFH
PDGSLAASCGLDAHARVWDLRSGRLYCTLIGHVKPVLGVSFSPNGHLVATASEDNFCRIW
DLRTRRMLYSIPAHKSLISHVKFEPQEGHYLATSSYDTRAALWSTRDYKPIKSLAGHESK
VTSLDISGDGQQIVTVSHDRTIKMWSCRSSIRDNEMELD
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagaaccccaggccccaagcccccggcttcacccctcccatggctcctctccccctc
cccctccacccgcccatcgcgcccatcccgggggcccctccccgcgcccccgcctccacc
tccgccgccgccgccgccgccgaaagcgacgacgatgacgaggtcgactacgaggtctcc
gacgaccaccgcgccgcgcgggagcggcacgagcgcgcggtgcaggagctcctgcagcgc
cgtcgcgcctacgccatggccgtgcccaccaacgactccgccgtgcgcgcgcgcctccgc
cgcctcggcgagcccatcacgctcttcggggagcgcgagatggagcgccgcgaccgcctg
cgcggcctcatggtccgcctcgaggccgacggccaggtcgaccgcctcctccgcgcgcag
gaggacgaccagggagccgcggccaacgacgaggacgacgccgagcagatccagtacccc
ttcttcaccgagggcaccaaggagctgctgcaggcgcgcgtcgacatcgcgcagtactcg
ctgccccgcgccaaggccagggtcgacagggcaaaacgccgcctcgctgaccccgacgag
gaccccgacgctgaggcagaccttgtcgtcaagcaggcgggggagttcgtgcttgagtgc
agcgagattggagatgaccgcccgctcacaggctgctctttctcccgtgatgcgtcgatg
ctcgcaacaagttcctggagtgggatcatcaaagtatggagcatgccacaaataactaaa
atcgcaaccctgaaaggtcatacagaacgtgcaactgatgttgccttttctccagttgat
aacgtcttagcaacagcctcagctgatagaactgccaaattatggaacagcgatgggtca
cttctaatgtctttcaatggtcacctggaccgtcttgctcgccttgcttttcatccatcg
ggaaagtacctgggtacagctagctttgacaagacctggagattgtgggacatcaatact
ggaacagagcttctactccaagaagggcacagcagaagtgtatatggagttagctttcac
ccagatggttctttagctgcatcttgtgggcttgatgcacatgctcgagtttgggatcta
agatctggaagattatactgtaccctcatagggcatgtgaaacctgttctaggagtcagc
ttctcccctaatggtcatctagttgcaactgcaagtgaagacaatttctgtcgaatatgg
gatttgaggactagaaggatgttatattctataccagcacataagagtcttatctcgcat
gttaaatttgaaccccaggagggtcattatttagcgacatcttcctatgacactagagca
gcgctatggtcaactcgggactacaaaccaatcaaaagtttggcaggacatgagtcgaaa
gttactagtttggatattagtggagatggacaacagattgtgactgtttcacatgataga
acgataaagatgtggtcgtgcagaagcagcatacgggataatgagatggagttggattaa
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