Lolium perenne (perennial ryegrass): 127333755
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Entry
127333755 CDS
T08650
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03013
Nucleocytoplasmic transport
lper03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127333755
03015 mRNA surveillance pathway
127333755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127333755
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127333755
5.6.2.5 RNA 5'-3' helicase
127333755
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127333755
mRNA cycle factors
Common to processing body (P body) and stress granule
127333755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NPHP3_N
nSTAND3
Helicase_RecD
ATPase
PhoH
SRP54
AAA_16
AAA_22
AAA_32
AAA_25
Ribosomal_S13_N
Hydin_ADK
AAA
Motif
Other DBs
NCBI-GeneID:
127333755
NCBI-ProteinID:
XP_051216149
LinkDB
All DBs
Position
2:104661921..104672650
Genome browser
AA seq
1265 aa
AA seq
DB search
MATQPPSSAAAADLYETASQPDPSASAAGDAYTFLEFNTQGDDFEYPDFPELSQPARSAP
PPPAPVTSSPSSSWPPPPPPPDASPDPDLAPQDSTPPASSSSPSPRSSASKARASAADGL
AAGVASLSFEEPPGAGAGEDGYDYGKGDFVEHACRYCGIHNPACVARCNVPSCRKWFCNS
RGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKAENVVVL
LCREPCLNVNALKDMNWDLSQWCPLIDDRCFLSWLVKVPSEQEQLRARQISAQQINKVEE
LWKTNPDASLEDLEKPGVDDEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKD
SLTVRWDVGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGGTSHPAWQSVGHVIKLTAQ
EEVALELRASQGVPVELNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGH
EVEHQIIRNTLPKRFGAPGLPELNASQVLAVKSVLQKPVSLIQGPPGTGKTVTSAAIVYH
MAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHL
DNSEKSEMHKLQQLKDEQGELSSSDEKKYKALKRATEREILQSADVICCTCVGAGDPRLS
NFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFE
RLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQTTGIDFPWPVPNRPM
FFYVQMGVEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNY
MSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRA
RYGIVVLGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLF
LGGGQGVMHGSTFGAAGSVDKRSGRGKGHPFVPFGPPNGAHKPGVHPSGYPLPRMPFPPF
PGSPHSQPYAIPTRGSLHGAIGAVPAVPQPGSRNFGAPRANTAGPIGGHLPPHQQNSQQA
MGPTYNYPGLENPSSQPSGGGPMSQPGLMTQMPVQGLSQTFRDGFTVGGMSQDFFGDDFK
SQGSHVAYNIADFSTQASQGGYGVEYTQGPQSGYPGNYLNQSAHPGYPHMGATNDIVSQD
HMAHGSHGMFTQAGYNDPSQDESSQMHYGMGAPGHLQSQSMMNPMYSQSYAHYNTQPQSL
QPPPQ
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcagccgccttcctccgctgcggccgctgacctctacgagacggcctcgcag
ccggacccctccgcctccgccgccggggacgcctacaccttcctcgagttcaacacgcag
ggcgacgacttcgagtaccccgacttcccggagctctcccagcccgcccgatccgcgccg
ccgcctccggcccccgtcacctcctcaccatcctcctcctggccgccgccgcccccgccg
cccgacgcctcgcccgaccccgatctcgcgccgcaggactccaccccaccggcctcctcc
tcctcgccctcgccccgctcgtccgcgtccaaggcacgggcgtcagcggcggacgggctc
gccgcgggggtcgcctccctcagcttcgaggagcctcccggtgcgggagcaggggaggac
ggctacgactacggcaagggcgacttcgtggagcacgcctgccgctactgcgggatccac
aaccccgcatgtgtcgcccgctgcaacgtgccgtcctgccgcaagtggttctgcaactcg
agggggaacacctctggctcccatatcgttaaccacctggttagagcaaaacataaggaa
gtttgccttcacaaggatagccctctgggtgaaacaatccttgaatgctacaattgtggc
tgtcggaatgtattccttcttggttttatatcagcaaaggcagagaatgttgttgttctt
ctgtgcagagagccctgcttgaatgttaatgcattgaaggatatgaactgggatctcagt
cagtggtgtcctcttattgacgacaggtgtttcttatcatggcttgtcaaggttccctca
gaacaggaacagctgagagcccgtcaaattagtgcccagcaaattaacaaagtagaagag
ctctggaaaacaaatcctgatgcttctcttgaagatcttgaaaagcctggtgtagatgat
gaacctcagccagtggttttgaagtatgaagatgcttaccagtatcaaaatgtctttgct
ccgctgataaagcttgaggctgactatgacaagatgatgaaggagtcacagagcaaggac
agtctaactgtgcggtgggacgttggattgaacaagaagcgtgttgcatattttgtcttt
ccaaaggaagataatgaattgagacttgtccctggagatgagctgcgtctgagatattct
ggtggtacttcacaccctgcatggcaatctgtggggcacgtgattaaactcactgcacaa
gaggaggtagcactggagcttcgtgctagtcagggtgtacctgttgaattgaaccatgga
ttcagtgtggattttgtttggaagagtactagctttgataggatgcaaggggcaatgaag
acttttgctgtagatgagacaagtgtcagtggatacatataccaccatcttttgggccac
gaagttgagcatcagataatacgtaatacactaccaaaacgctttggtgcacctggactt
ccagaactaaatgcttcccaggtcttggcagttaaaagtgttcttcagaagcccgttagt
ttgattcaaggcccacctggcactgggaaaactgttacatcagctgcaatcgtgtaccac
atggcaaaacaaggtcaaggacaggtccttgtatgtgcaccaagtaatgttgctgttgat
cagttggcagagaagataagctcaacaggtctcaaggttgttaggctctgtgcgaaatct
agagaagctgtttcatcacctgttgagcatctgacacttcattatcaggttcggcatctc
gataattctgaaaagagcgaaatgcataagctacagcaactgaaagatgaacaaggggaa
ttatcgagcagtgatgagaaaaagtacaaggcactaaaacgggccactgaaagagagata
ttacaaagtgctgatgtgatttgctgcacttgtgttggtgctggagaccctcgtttgtca
aacttccgttttcgccaggttcttatcgatgagtctacacaggcaacagagccggaatgt
cttattccgttggttcttggtgtcaagcaggttgttcttgttggagatcattgccaattg
ggtcctgtcatcatgtgcaaaaaggcagcacgagcaggattagcacaatctctctttgag
cgccttgttatccttggagtcaagccattcaggctacaggtccaatatagaatgcaccct
tgtctttcagaatttccgtccaactgtttctatgaaggcacgctgcaaaatggagtaact
gtaaatgaaaggcaaacaactggaattgattttccttggcctgttccaaatcgacccatg
ttcttctatgtgcagatgggagtagaagagataagtgctagtgggacatcttacctcaat
agaactgaagctgcaaatgtagagaaaattgtaactacattcttaagaagtggtgttgtg
ccaagccagattggagttatcacaccttatgaagggcaaagggcgtatattgtaaattat
atgtcaaggaatggctctctccgccaacagctttataaggaaattgaggtggcaagtgtc
gactcctttcagggaagagaaaaagattacattattctgtcctgtgttagaagcaatgaa
caccagggtattgggtttctcaatgatccacgcaggttaaatgttgcgttaactcgtgct
cggtatggtatagtcgttcttgggaatccaaaagttctaagcaagcaacctctttggaat
agcttgttgacacattacaaggagcatgagtgcttggtagagggacctttgaacaacttg
aagcagagtatggtgcaatttcaaaaacccaaaaagatctacaatgatcggagactgttc
ctgggtggtggtcaaggtgtcatgcatggatctaccttcggcgcagcaggctcagtagat
aagagaagtggtaggggaaaaggtcacccgtttgttccatttgggccgccaaatggtgct
cacaagcctggtgtgcacccatcaggctatcctttaccccgtatgccatttcctccattt
cctgggtctcctcattctcaaccctatgcaattcctacccggggatccctgcatggagcc
attggagctgttccagcggtgcctcaacctggtagcagaaactttggggctcctcgtgca
aatactgctggccctattggtgggcaccttcctcctcatcaacagaactctcagcaagct
atggggccaacttataactatcctggcttggaaaacccgagcagtcagccatctggtgga
ggcccgatgtcccaacctggactgatgacacagatgcctgttcaaggtctcagtcaaacg
ttccgcgatggatttaccgttggtggaatgtctcaggacttctttggagatgattttaag
agtcaaggatctcacgtggcatacaacattgcagatttttctactcaggcttctcaaggt
ggttatggtgttgaatatacacaagggccccaatctggatatcctgggaattatttgaac
caaagtgcgcatccaggatacccacatatgggtgcaacaaatgatattgtatctcaggat
cacatggcccatggttcacatggaatgtttacacaagcgggatacaatgacccatcacaa
gacgagtcttctcagatgcattatgggatgggtgctcctggccatcttcagtcgcagagc
atgatgaatcctatgtactctcagtcttatgctcactataacacacaaccccagtccctg
cagcctcctccacagtga
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