Lolium perenne (perennial ryegrass): 127335726
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Entry
127335726 CDS
T08650
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127335726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127335726
03036 Chromosome and associated proteins [BR:
lper03036
]
127335726
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127335726
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127335726
mRNA degradation factors
5'-3' decay
Decapping complex
127335726
Chromosome and associated proteins [BR:
lper03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127335726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
127335726
NCBI-ProteinID:
XP_051218413
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All DBs
Position
2:258049921..258057790
Genome browser
AA seq
501 aa
AA seq
DB search
MDQRARFPPGIGNGRGGNPNFYGRGPPPMQQHHQQPPPQQQQQPQGHLQQYMQRHSQHHN
QQLQHQQWLGRNQVAGEAAGTSRASEQQSRPAADDVDLSSQDWKAQLKLPPPDTRYQTED
VTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSNILARAKNGTGKTAA
FCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIV
RLYQPVHLLVGTPGRVLDLTKKGICILKDCSMLIMDEADKLLSPEFQPSVEQLIRYLPSS
RQILMFSATFPVTVKAFKDKYLSKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFS
KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC
TDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE
QELGTEIKPIPPQIDRTIYCQ
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggatcagcgggcgaggttccctcccgggatcggcaacggccgcggcgggaaccctaat
ttctacggccgtggcccgccaccgatgcagcagcatcaccagcagccgccgccgcagcag
cagcagcagccgcaggggcacctgcagcagtacatgcagcggcactcgcagcaccacaac
cagcagcttcagcatcaacagtggcttggacggaatcaggtcgctggcgaggccgcgggc
acctccagagccagcgagcagcagtcgcggcctgctgcggatgacgtcgatttgagttcg
caagactggaaggcccaattgaagctcccacctccagatacacgctaccagacagaggat
gtcactgcaactaagggaaatgaatttgaagactattttctgaagcgtgaacttcttatg
ggcatatatgagaaaggatttgaaagaccttctcctatccaagaagaaagcattcctatt
gcactaaccggcagcaacattcttgcaagagcaaaaaatggaactggcaagactgccgca
ttttgtataccagcgctagaaaagattgatcaagacaaaaatgctattcaagttgttata
ttggtccccacgagggaactggctttacaaacgtcacaagtctgcaaagaacttgggaag
cacctgaagattcaagtcatggtcactactggaggaacaagcctaaaggatgatatcgtc
cgtctttatcaacctgttcatttacttgttgggacgcctggtcgtgttttggaccttaca
aagaaaggcatttgcattctgaaggactgttcaatgcttattatggatgaggcagacaag
cttctttctcccgagttccaaccttctgtggagcagttaattcgataccttccatcgagt
cgacagattctgatgttctctgcaacattccctgtgactgtcaaggctttcaaggacaaa
tatctctctaaaccctatgttattaaccttatggacgaacttacattgaagggcattacc
cagttctatgcttttgttgaagaaaggcagaaggttcattgtctgaatactcttttttcc
aagctgcaaattaatcaatcaataatattctgtaactctgtaaatcgtgttgaactactg
gcgaagaagatcacagagcttggctactcttgcttctacatccatgctaaaatgctgcaa
gatcatcgtaatagagtattccatgatttccgtaatggtgcgtgcaggaaccttgtgtgt
acagatctttttacaaggggaattgatatccaagctgttaatgttgttatcaattttgat
ttccccaagaacgctgaaacctatctccacagggttggtagatctgggagatttggccac
cttggcctggctgtgaatctgatcacctatgaggatcgctttaacttatatcggattgag
caggagcttggaactgagataaaacctatacctcctcagatagataggacgatatattgc
caatag
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