KEGG   Lolium perenne (perennial ryegrass): 127335888
Entry
127335888         CDS       T08650                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
lper  Lolium perenne (perennial ryegrass)
Pathway
lper03030  DNA replication
lper03410  Base excision repair
lper03420  Nucleotide excision repair
lper03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lper00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    127335888
   03410 Base excision repair
    127335888
   03420 Nucleotide excision repair
    127335888
   03430 Mismatch repair
    127335888
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lper03032]
    127335888
   03036 Chromosome and associated proteins [BR:lper03036]
    127335888
   03400 DNA repair and recombination proteins [BR:lper03400]
    127335888
DNA replication proteins [BR:lper03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    127335888
  DNA Replication Termination Factors
   ELG1-RFC complex
    127335888
Chromosome and associated proteins [BR:lper03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    127335888
DNA repair and recombination proteins [BR:lper03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     127335888
  Check point factors
   HRAD17(Rad24)-RFC complex
    127335888
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_22 Rad17 Mg_chelatase AAA_16 Viral_helicase1 RuvB_N RCF1-5-like_lid nSTAND3 AAA_11 AAA_assoc_2 AAA_19 AAA_25 AAA_28 AAA_5 AAA_30 DNAX_ATPase_lid ABC_tran AAA_24 DUF6120 RNA_helicase IstB_IS21 AAA_3 MeaB bpMoxR AAA_18 NTPase_1 DO-GTPase1
Other DBs
NCBI-GeneID: 127335888
NCBI-ProteinID: XP_051218577
LinkDB
Position
2:273382105..273386889
AA seq 334 aa
MAAASSSAAAPADTYNIPWVEKYRPSRVADVVGNSDAVSRLEVIARDGNMPNLILSGPPG
TGKTTSILALAHEMLGPSYREGVLELNASDDRGLDVVRNKIKMFAQKKVTLPPGRHKIVI
LDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEIL
GRLMVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPH
PLHVKNIVKNVLDGKFDEACSGLKQLYDLGYSPTDIITTLFRVVKNYDMAEYLKLEFLKE
TGFAHMRICDGVGSFLQLSGLLAKYALARETAKA
NT seq 1005 nt   +upstreamnt  +downstreamnt
atggccgccgcctcctcctccgccgccgcccccgccgacacgtacaacatcccgtgggtg
gagaagtaccgccccagccgcgtcgcggacgtcgtcggcaactccgacgccgtcagccgc
ctcgaggtcatcgcccgcgacggcaacatgcccaacctcatcctctccgggcctccgggg
accgggaagacgaccagcatcctggcgctggcccacgagatgctcgggcccagctaccgc
gagggcgtgctcgagctcaacgcctccgacgacagggggctggatgtggtgcggaacaag
atcaagatgttcgcgcagaagaaggtcacgctgccgcctggacggcacaagatcgtcata
ctggacgaggctgacagcatgacaactggggcacagcaagcactcagaagaaccatggag
atctattccaacaccacaagattcgctcttgcgtgcaatacttcatctaaaatcatcgaa
cccatccaaagtcgctgcgctattgtccggttctcgaggctttcagatcaggagatcctt
ggccgccttatggttgtggtggcagctgagaaggtcccttatgtgccagaaggtcttgaa
gccattatttttactgctgatggtgacatgagacaagctttgaacaatttgcaagctaca
gttagtgggtttcgttttgttaatcaagaaaatgtgttcaaggtatgcgaccaaccacat
cccttgcatgtcaagaatatagtgaaaaatgtacttgatggaaagtttgatgaggcctgc
tctggcctaaagcaactctatgatctgggctactctcctactgacataatcactaccctt
ttccgtgttgtcaagaactatgacatggctgaatatctgaagcttgaattcctgaaggaa
actggatttgcccacatgaggatctgtgatggtgttgggtcgttccttcagctttctggc
cttctggctaagtatgccctggcgagagaaacagcaaaagcgtaa

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