Lolium perenne (perennial ryegrass): 127340804
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Entry
127340804 CDS
T08650
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127340804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127340804
03012 Translation factors [BR:
lper03012
]
127340804
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127340804
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127340804
Translation factors [BR:
lper03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
127340804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
HA2_N
nSTAND3
T2SSE
PhoH
AAA_22
DEAD
ATPase
AAA_16
AAA_19
ABC_tran
Motif
Other DBs
NCBI-GeneID:
127340804
NCBI-ProteinID:
XP_071683938
LinkDB
All DBs
Position
3:32479246..32488817
Genome browser
AA seq
1168 aa
AA seq
DB search
MLLASTVLRGRLRPLRRPRPPIMPAPLFLSQNPNPSASPAPASMSSTNGVYVPPMRRLRS
VIASTSGNLAPPPSVQPAWTPDWRADGRSLSPPSPPQTQRRSAALPPRPPPQRQPQTQPM
RQQSAGYSRYAYDDFSEEESDREMDRVSVSSSSKGASTLDNVDEWKWKLHMLLRNDNEQE
IMSRERKDRRDFDQLAQLAERMGLHSRQYARIIVFSKVPLPNYRSDLDDKRPQREVSIPS
GLQREVDALLADYLARKRTDSGNFPNAAFSRSSSTDSFMTDEGFYEQQDNQASTNVVMER
IQRKKSLQLRNQQAAWQESNDGQSMMEFRRSLPANKERQSLLEAISQNQVVVVSGETGCG
KTTQLPQYILESEIEAARGATCSIICTQPRRISAISVSERVAAERGEKIGESVGYKVRLE
GMRGRDTRLLFCTTGVLLRRLLGFTYPVRSRFLEDILEVTGHRLTPYNQIDDYGQEKSWK
MQKQALRKTKTQIASVVEDAVKTADLRDYSPQTRDSLSCWNPDSIGFNLIENVLCHICQK
ERAGAVLVFMTGWDDINTLKEQLQSNPLLGDPSKVLLLACHGSMASAEQKLIFDKPEPGV
RKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWISKASARQRRGRAG
RVQSGECFHLYPQCVYNVFADYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRALQSPES
LSVQNAIDYLKVIGAFDQNEELTVLGKHLSMLPVEPKLGKMLIFGAIFNCLDPILTIVSG
LSVRDPFMTPFDKKDLAESAKLQFSCREYSDHLAIVHAYDGWREAERDRNGYDYCWRNFL
SAQTLKALDSLRRQFIFLLKDTGLIDENMTMCNKWSRDANLVRAVICAGLYPGVSSVVNK
EKSVSLKTMEDGQVMLYSSSVNGKEGKIPFPWLVFNEKVKVNSVFLRDSTAISDSTLLLF
GGNIQRGGLDGHLKMLGGYLEFFMSRDLASTYLNLKNELENLIHHKLQNPRMDIQTSEEL
LSAVRLLVTEDPCSGRFVYGRQEPRSKKAKMMLAPASVSMDRGGGHGGDNPKNQLQTLLT
RAGNDNPTYKTKQIKNSLFRSTVEFNGMEFVGQPCANKKLAEKDAAGEAINWLTGGGAPP
DTRDARDMDHMSMLTKPPRRKRHHHRRS
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgctcctggcctccacggtcctgcggggtcgcctccgccccctccgccggccccggccc
ccgatcatgcccgccccgctcttcctctcccaaaaccctaaccccagcgccagccccgcc
cccgcctccatgagcagcaccaacggcgtctacgtgcccccgatgcggcggctccgctcc
gtcatcgcgtccaccagcggcaacctggccccgccgccctccgtgcagcccgcgtggacg
cccgactggcgcgcggacggccgctccctcagcccgccctcgccgcctcagacgcagcga
cgctccgcggccctcccgccgcggccgccgccccagaggcagccccagacgcagcccatg
cgccagcagagcgctgggtactctcggtacgcgtacgatgacttttctgaggaggagtcc
gacagggaaatggaccgcgtctcggtgtcgtccagtagtaagggtgcatctactttagac
aatgttgacgaatggaaatggaaactgcacatgcttctccgaaacgacaatgagcaagag
attatgtctagggaaagaaaggacaggcgtgattttgatcagcttgcccaactggcagag
cgaatgggtttgcacagccgtcagtatgctcgaatcattgtgtttagtaaggtgcccttg
cctaattatagatcagaccttgatgacaaaaggcctcaaagagaggtatctataccctct
ggcttgcaaagagaagttgatgcgttgcttgcagactatcttgcacggaagagaacagac
agtgggaactttcctaatgctgccttctcaaggtctagcagcacagacagttttatgact
gatgaaggcttctatgagcagcaggataatcaggcatcaacaaatgttgtgatggagaga
atccaaagaaagaaaagcttacagttgcgtaaccagcaagctgcttggcaggaatcaaat
gatggtcagagcatgatggagtttcgtcgcagtcttcctgccaataaagaaaggcaatca
ctactggaagctatatctcagaatcaggtggttgtagtttctggtgaaactggctgtggt
aagacaacacagctgccacaatatattttagagtctgaaatagaggctgctcgcggtgct
acttgcagtatcatttgcactcaaccaagacgaatatcagctatttctgtttctgaaaga
gttgctgctgaaagaggtgaaaaaattggggaatcggttggctacaaagttcggttggaa
ggaatgagaggaagggatacgcgccttctgttctgcactactggcgtcctgttgcggcga
ttgctgggttttacataccctgttcgaagtcgttttctagaagatatccttgaagttacc
gggcacagattgaccccgtacaatcagattgatgactatggccaagagaaaagttggaaa
atgcaaaagcaagctctgaggaagacgaagacccaaattgcttctgttgtggaagatgca
gttaaaactgctgatttaagggattatagtccgcagactcgtgactcgctatcctgctgg
aatcctgattcaattggttttaacttaatagaaaatgtattgtgccatatttgtcaaaag
gaaagagctggtgctgttcttgtgtttatgactggctgggatgacattaatacactgaaa
gagcagctgcaatcaaacccattacttggtgaccctagcaaagttttgcttcttgcatgt
catggttcaatggctagcgcagagcagaaactaatattcgataaacctgagcctggcgta
aggaaaatagttcttgctaccaatttggctgaaactagtattactatcaatgatgtagtc
tttgttgttgattgtggaaaagcaaaggagacatcttatgatgcattgaataacacgccc
tgtttgcttcccacctggatctccaaggcttctgccagacaaagacgaggaagagctggc
cgagttcagtcaggggagtgtttccatctttatccacagtgcgtatataatgtgtttgct
gactaccagttgccagaacttctgagaacccctctccaatccctatgcttgcaaataaaa
agcttgcggcttgggagcatctcagaattcttatccagagctttgcaatcacccgagtct
ctatcggtacaaaatgccattgattatctcaaagtcattggagcatttgatcagaatgaa
gagttaacagttctaggaaagcacttgtctatgcttccagtagagcctaaattgggcaag
atgcttatttttggggctatttttaactgccttgatcccatattaacaatagtttcggga
cttagtgttagagatccattcatgacaccatttgacaagaaggatcttgcggagtctgcc
aagttacagttttcatgtcgtgagtatagcgatcaccttgcgattgttcatgcatatgat
ggatggagagaagctgaaagagatcgcaatggctatgactactgctggagaaattttctg
tctgcacaaaccttgaaagccctagattctctccggaggcagttcatctttcttttgaag
gacactggtctgattgatgaaaacatgactatgtgcaacaaatggagtcgtgatgcaaat
ctagttagggcagtcatttgtgcgggactatacccaggtgtttcatctgttgtgaacaag
gagaaatcagtttctctgaagacaatggaggatggacaggtcatgctttactcgagttca
gtcaatggcaaagaaggcaagattccattcccctggctagtgttcaatgagaaagtgaag
gtgaattcagtgtttctccgggattcaacagcaatatctgactctacattgttgctcttt
ggaggaaacattcaacgagggggcttggatggacacttgaaaatgcttggaggctatctg
gagttctttatgagccgtgatctcgcatcaacttacttgaatctcaagaatgaactcgaa
aatttaatccatcacaagcttcaaaacccaaggatggacatccaaaccagtgaggagctt
ctgtctgctgtacggttgctggtcacggaggacccgtgcagtggtcggtttgtctatggc
cgacaagaaccaagatcaaagaaagcgaagatgatgctcgcgccagcctcagtctccatg
gaccgtggaggcggacacggaggggacaaccctaagaaccagctccagactcttctaaca
agggctggaaacgacaacccaacctacaagacaaagcagatcaagaacagcctcttcagg
tcgacagtcgagttcaacggcatggagtttgtagggcagccttgcgcaaacaagaagctc
gcggagaaggacgcggcgggagaggcgatcaactggctcacgggtggaggggctccccct
gacacgagagacgcacgggacatggatcacatgtccatgctgacgaaaccgccacgcagg
aagaggcaccaccataggaggtcctga
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