Lolium perenne (perennial ryegrass): 127341190
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Entry
127341190 CDS
T08650
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127341190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lper03041
]
127341190
03009 Ribosome biogenesis [BR:
lper03009
]
127341190
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127341190
Spliceosome [BR:
lper03041
]
Complex A
U1 snRNP components
U1 related factors
127341190
Complex B
127341190
Ribosome biogenesis [BR:
lper03009
]
Eukaryotic type
Pre-60S particles
Helicases
127341190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
SWI2_SNF2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
127341190
NCBI-ProteinID:
XP_051222936
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All DBs
Position
3:35965504..36002932
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AA seq
644 aa
AA seq
DB search
MATPGPRYAPPDPTLPKPWKGLIDGTTGYLYFWNPETKVTQYDRPMGPPPAPVAPAPAPA
PVAQPQYHHEERPRNRDHPPEQRHSESAGSRAPYADHKPRSDPSLEQRYSAGANPATMAP
TNPAPQATNGSSMSVDAYRAKHEITVIGNEKPAPFMSFQSTGFPAEILREVQQAGFSAPS
PIQAQSWPISLKGRDIVAVAKTGSGKTLGYLLPGFILCKSLRNNSRDGPTVLVLSPTREL
ATQIQDEAIKFGRSSRISSTCLYGGAPKGPQIRDIERGVDIVVATPGRLNDILEMGKVSL
RQVAYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEVRRIASDLLTNPIQ
VNIGNTDELVANKSITQHVEVTTSMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDTLSRN
LSRQYRASAIHGDKSQAERDSVLSEFRSGRCPVLVATDVAARGLDVKDIRVVVNYDFPTG
VEDYVHRIGRTGRAGATGIAYTFFCDNDAKYASDLVKILEGANQTVSQQLRDMVGRGGYG
GRPRGRWASSNDSYGGQGSFGGHTRDSSSFQSSAYNSSSQYGGTPSFNASSNNNQTSGVS
SLPASGSNNQSGEGLSFHERFYSSRGGDRARSRSPPKAMGVSNW
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccggggccccgctacgcgccgccagatccgacgctgcccaagccctggaag
ggcctcatcgacggcaccaccggctacctctacttctggaacccggagaccaaggtcacc
cagtacgaccgacccatgggcccgccccccgcccccgtcgcgcccgcccccgcacccgcc
cccgtcgcgcagccccagtaccaccacgaggagaggcccaggaacagagaccacccgccg
gagcagcgccacagcgaatctgcaggaagccgcgcgccatatgctgaccacaagcccagg
agcgatccttctttggagcagcgctattcagctggagcaaaccctgcaactatggctccc
actaacccagctccgcaggctaccaatggaagcagcatgtcggtggacgcctaccgtgct
aagcacgagattactgttatcggaaatgaaaagccagctccattcatgtcgtttcagtcc
acgggcttccctgcagagattctaagggaggtccaacaggcaggattctctgcaccaagt
cctatccaagctcagtcatggcctatttctctaaaaggtcgtgatattgtagctgtggcg
aagacaggttctggaaaaaccctgggttatctacttccaggatttattctttgtaagagc
ctgcgaaacaattcacgcgatggaccaacggtgctggttctctctccaaccagggaacta
gcaacacagattcaagatgaagcaatcaagtttggcagatcttcaagaatctcatctact
tgtctatatggcggtgctccaaaaggccctcagataagagatatagagcgtggcgttgat
attgttgttgcaactcctggaagattgaatgacattctagaaatgggaaaagtgagcctt
cgtcaagtagcatatcttgttcttgatgaagctgaccgtatgcttgatatgggatttgag
ccacagataaggaaaattgtgaaacaagtacaacctaagaggcaaactcttatgttcact
gccacttggccaaaagaggtgagaagaatagcgtcagatttgctgactaaccctatccag
gttaacattgggaacactgatgagctggttgcaaataagtcaatcactcagcatgtggaa
gttaccacaagtatggagaaacagagacgccttgagcagatcttgagatcacaggagcct
ggatccaaagtcataatattttgctccacaaaaaggatgtgtgatactctgtcaagaaat
ctatcacggcagtaccgtgcatctgccatacatggtgataaatcacaggctgagagggat
tcagtgttgagtgaatttcgaagtggcaggtgcccagttcttgtagctactgatgtcgct
gctcgaggcttagacgtaaaggacatcagagttgtggttaactatgatttcccaacgggg
gttgaggactatgtccatagaatcgggagaacaggtagagccggtgcgactggaatcgca
tatacattcttctgtgacaacgatgcaaagtatgcttcagatcttgtgaagattttggag
ggtgcaaaccaaactgtctcacaacagttacgagatatggttggccgcggagggtatggt
ggcaggccgcgggggcgctgggcatcttctaatgattcctatggtggccagggatctttt
ggcggccacactcgagatagttcaagctttcagtcaagtgcctataacagcagcagtcaa
tacggtggcactcctagcttcaatgccagcagtaacaacaatcagaccagtggcgtttca
agcttacctgccagtggcagcaacaatcagtcgggtgaaggcctcagctttcatgaaagg
ttctacagctctagaggtggtgaccgtgctaggagcaggagtcctcccaaggccatgggg
gtctccaactggtaa
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