Lolium perenne (perennial ryegrass): 127341556
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Entry
127341556 CDS
T08650
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127341556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lper03041
]
127341556
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127341556
Spliceosome [BR:
lper03041
]
Complex C
Other components
Step II factors
127341556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
RRM_DEAH11
KH_DEAH11
Helicase_C
OB_NTP_bind
IBR
DEAD
IBR_1
zf-RING_UBOX
HA2_N
AAA_22
RRM_1
AAA_19
zf-C3HC4
ResIII
ABC_tran
Arc_MA
KH_SLS1_1
AAA_29
gp37_trimer
zf-Nse
Motif
Other DBs
NCBI-GeneID:
127341556
NCBI-ProteinID:
XP_051223378
LinkDB
All DBs
Position
3:70089184..70101316
Genome browser
AA seq
1751 aa
AA seq
DB search
MRPSHDRRPYRPPDRGSPPPHRYHNQQPHRQPPPHARQYAVILLRAAPDSSTPSATEIDA
LVAGLQSPPPDSLSVSSSGRQAARLLFRSLPKAAEAARELWSLRLDGLHFINPHLPDAPL
AAHAYPLLASLFASHASRLLDSDLVSRCAARSAELAVSIQSVKHRLRAHNKLRDFDQLDL
QKRTLEAEKDLVDDKIAEYKAAMNSIRRAMLCGTDDEEEVDEEGVDVFGIIREGEDVDFV
RLHMMMLRECRRLNEGLPIYAYRRKILDHIFNNQVMILIGETGSGKSTQLVQFLADSGLA
ANGSIVCTQPRKVAGLSLAHRVDEESKGCYKDNFVSSYSSFFNSQDLSSKIIFCTDSCLL
HHYMDDTDLSGISYIIVDEAHERSLNTDLLLALIKKKLLDRLDLRLIIMSATADANRLAE
YFYGCQTFHVKGRNFPVEIKYVPDLSVEASLNTGLNSPRGACATAAYVDDVIRQVSIIHK
GEDEGAILAFLTSQLEVEWACENFSDARAVVLPMHGKLSPVEQSRVFKSFPGKRKIIFCT
NIAETSLTIKEVKYVVDSGLVKESRFVPTSGLNVLKVNWISQSSANQRAGRAGRTGAGKC
YRLYSQSDFSMMEVHQEPEIRKVHLGTAVLRILALGVKDAQNFEFVDAPNPEAINIAVKN
LEQLGAIKCKYNCFELTDIGRHLVKLGIEPRLGKIMLDCFSFGLRKEGVVLAAVMANSSS
IFCRVGTDEEKHKADLQKVRLCHQDGDLFTLLAVYKKWEDGHENRNMWCWQNSINAKTMR
RCQETISELEKCLKHELNIIIPSYWCWNPEAPTVHDKLLKRIILSSLAGNLAMFLGHERS
GYQVISTDQVVNLHPSCSLLNYGIKPEWVVFAEILSVPNQYLVCVTAVDHDALCTIHPMS
FIQQLEKQKLQIKVISGLGNNLLGKFCGKSGQNKQKIVSRLQEECRDDRLTVEINFKNNE
VILFATEQHMEKVFCIVNNALECEGKMMRNECLERSLFPERCGSSPIALFGSGAEIKHLE
LEKRYLTVEVLHQNAHDINEMELICLVDSLVSGVVNIHKFARNFRIASDETKWGKFTFLK
PENAEDAVSKLNGVEFHGSSLKVVPVYSSDNQGLPFPAVRAKLCWPRKPSKGLALVTCAS
GEAQSVANDCFALGIDGRYVNCRVSTKEENCVFVERIPLHVTEPELYDAFRSTTTRRILN
IRLLRVKGAIAGPSVSVCEEALIREISSFMRNKSFPGQNFRVEVFPPEENDSMMRATLTF
DGSLYQEAARALDHLQGSILPCCQPWQIIECKHVFHSTLSCPVRVYNVISLEVASLLENF
RSQKGVSYSFEKTENGIFRVKLTANATKTIADLRRPLEILMKGKTINHPDLTLSAVHMLL
SRDGVTHLKSIEQETGTYIMYDRRSLNIKVFGNQNHMAEAEEKLVHVLLQLLEKRPLEIF
LRGHNLPPDLMKKTIEIFGVDLEGFKKEMPTVKVDLHKHRHLLKVWGSKEDKRRVEGMVS
ELIISVKSNALVQLPSENVGGSKEDKQRVDDNELSNDTCPICLCETEDPFKLETCAHVFC
RACLVDQCESATKSHDGFPLCCLRTGCKKPFLIVDLKHLVSKEKMDDLFRASLRAFVASR
AGMYRFCPTPDCRSIYQVAAPDAEAKPFVCGACYVEICTKCHLEYHPFISCEAYKEYKED
PDTTLREWRKGKENVKNCPCCGYTIEKADGCNHVECRCGSHICWACLANFRSSEECYGHL
RSVHQSFVDIV
NT seq
5256 nt
NT seq
+upstream
nt +downstream
nt
atgcgtccatctcacgaccgccgcccgtaccgcccgccggatcggggctccccgcctccc
caccgctaccacaaccagcagccccaccgccagccgcccccgcacgcgcgccagtacgcg
gtgatcctcctccgcgcggcgcccgactcctccaccccgtccgccacggagatcgacgcg
ctcgtcgccggcctccaatctccacccccggacagcctctccgtcagctcctccggccgc
caggccgcgcgcctcctcttccgctccctccccaaagccgcggaggccgcgcgcgagctc
tggtcgctccgcctcgacggcctccacttcatcaacccgcacctccccgacgcgccgctc
gccgcccacgcctacccgctcctcgcctccctcttcgcctcccacgcgtcccgcctcctc
gactccgacctcgtctcccgctgcgccgcgcgctccgccgagctcgcggtctccatccag
tccgtgaaacaccgcctgcgcgcccacaataaactccgcgacttcgatcagctcgatctc
cagaagagaacactggaggctgagaaggacttggtggatgacaaaattgcagagtacaaa
gcagcgatgaattccatacggcgtgccatgttgtgtgggacggatgacgaggaagaggtg
gatgaggagggggtggatgtgtttgggattatcagggaaggcgaggatgtggactttgtg
aggttgcacatgatgatgctgcgcgagtgcaggaggctcaacgaggggctacccatctac
gcataccgcaggaaaattcttgatcacattttcaataaccaggttatgatcttaattggg
gaaactggttctgggaaaagcacacaactagtccagtttcttgctgattcaggtcttgct
gcaaatggctcaattgtctgcacgcaaccgcggaaagttgctggtctgtcgctggcacat
agagtagatgaagaaagcaagggctgctacaaggacaatttcgtgtcatcatattcaagc
ttttttaattcccaagatttaagctctaagatcatattttgcacagatagttgtctctta
catcactatatggacgatacagacctgagtggcatttcatatatcattgttgatgaagct
catgaaagaagcttgaacactgatcttctcttagctttgatcaagaagaagctgcttgat
aggttggatttgcgactcattataatgtctgccactgctgacgctaatagacttgctgaa
tatttttatggctgtcaaactttccatgtgaaagggagaaattttcctgttgaaattaaa
tatgtgccagatttgtcagtggaggcttctttgaatactgggctaaattctccacgtggt
gcttgtgccactgctgcttatgtcgatgatgttataagacaggtaagcattattcacaag
ggtgaagacgagggtgccatccttgctttcttgacatctcaactggaagttgaatgggct
tgtgaaaatttcagtgatgccagggctgtggttcttcctatgcatggaaagctttcccct
gtagaacagagtcgtgtttttaaaagctttcctggaaagagaaaaattatcttctgcacg
aatatagctgaaacatcactgactataaaagaagtgaagtatgttgttgattctggtctg
gtcaaggagagcagatttgttcctaccagcggcctcaatgtcctgaaagtaaattggatt
tcccaaagctcagctaatcaacgtgctggccgggcaggtcgaacgggagcagggaagtgt
tataggctttactcccaatctgacttcagtatgatggaagtgcatcaagaacctgaaatc
cgtaaagttcatctcggcactgctgttctgagaatacttgctttgggtgttaaagatgca
caaaattttgagtttgttgatgccccaaatccagaagctatcaatatagctgtgaagaac
cttgaacagttgggtgctatcaaatgtaaatataattgctttgagctgactgatattgga
cgccacttggtaaaattgggaattgagccaaggcttggaaaaattatgcttgattgcttc
agttttggtttgaggaaggaaggtgttgttttagctgctgttatggcaaattctagcagt
atattttgtagagtgggcactgatgaggagaaacataaagctgaccttcagaaggtccga
ttgtgtcaccaagatggagatctgttcactctactcgctgtttataagaaatgggaggat
ggacatgaaaacaggaatatgtggtgctggcagaacagcatcaacgccaagaccatgagg
aggtgccaggaaactatatcagaacttgaaaagtgcctaaagcatgagctgaacattatt
atcccaagttattggtgttggaatcctgaggctcccactgtgcatgataagttgctgaag
agaattatcctgtcatctcttgcaggtaatcttgctatgtttttaggacatgaaaggtct
ggttaccaggtgatttctacagatcaggttgtgaaccttcatccttcatgctcattgctc
aattatggcatcaagccagagtgggtggtgtttgcagaaatcttgtcagtgccaaatcaa
tatttggtatgcgtaactgctgttgatcatgatgccttgtgtacaattcacccaatgtct
ttcattcagcaactggagaaacagaaattgcagataaaggtgattagcgggcttggtaat
aacctgctaggaaaattttgtggcaaatctggccaaaataagcagaagattgtctcacgt
ctccaggaagaatgcagggatgaccgattaactgttgaaattaacttcaaaaataatgag
gttattctgtttgctacagaacagcacatggaaaaggtcttttgcattgttaacaatgct
ttggaatgtgaaggtaagatgatgcggaatgaatgccttgagagaagtttatttcctgag
aggtgtggcagttctcccattgcactatttggctcaggtgctgaaatcaagcatttggaa
cttgagaagagatatctgacagtagaggttctgcatcaaaatgcccatgacatcaatgag
atggagctcatttgtctggtggatagtcttgtctccggtgttgttaatattcataaattc
gccagaaatttccgcatagcttcagatgaaactaaatggggtaaatttacattcctcaaa
cctgaaaatgctgaagatgctgtctcaaaattgaacggagtagagtttcatggttcttcc
ctaaaagtagttcctgtgtattcttccgataatcaaggattaccatttcctgcagtaaga
gctaaattatgttggccacgtaagccaagcaagggccttgcacttgtaacatgtgccagc
ggggaagctcaatctgttgcaaatgactgctttgccctaggaattgatggaaggtatgtc
aattgtagggttagtacgaaggaggagaactgtgtctttgtcgaaagaattccattgcat
gtcacggagccagaactgtatgatgctttccgtagcacaacaacaaggagaatccttaat
atccgtttactcagggtcaagggagccatagctggcccctctgtttcagtatgtgaagaa
gcgttgattagagaaatttcttcattcatgcgaaacaagagttttcctggacaaaatttc
cgtgttgaggtgttccctccagaggaaaatgattcaatgatgagagcaactttaactttt
gatggaagtctttatcaagaagctgcaagagcactggaccatctgcaaggaagtattctt
ccttgttgtcaaccttggcagatcatagaatgcaagcatgtatttcatagcactctgtcc
tgtccggtacgtgtttacaatgttatcagcctggaagttgcttctctgcttgagaacttc
cgaagccaaaaaggtgtgtcttacagttttgagaagactgagaatggtatttttcgagta
aagctcactgcaaatgccaccaaaacaatagcagatttgagaaggccgcttgaaattttg
atgaaagggaaaaccataaaccacccagatctgacactaagtgcagttcatatgctcttg
tcccgtgatggtgtaacacatttgaaatcaattgaacaagagactggtacttacattatg
tatgacaggcgaagtctaaatattaaagtctttggaaaccaaaatcatatggctgaagca
gaggagaaattagttcatgtacttctgcagctccttgagaagaggcctcttgaaattttt
cttcgtgggcataacctccctccagacttgatgaagaaaacaatagaaatttttggagtt
gatctggaaggattcaagaaagagatgcccacagtaaaggttgacttacataagcaccgc
catttactcaaagtttggggcagtaaagaggacaagcgacgagtggaagggatggtctcc
gagttgataatctctgttaaaagcaatgctctggttcaacttccgtcagagaatgttgga
ggcagtaaagaagataaacaaagggtggatgacaatgagttgtcaaatgatacatgccct
atttgcttgtgtgagactgaagatccttttaagcttgaaacgtgtgcgcatgtgttttgt
cgtgcttgcttggtggaccagtgtgaatctgccacaaaatcacatgatgggttccctctt
tgttgcctcagaaccgggtgcaagaagcccttcctcattgttgacctgaagcaccttgtg
tcgaaagagaagatggatgacctatttagagcttccctgagggcatttgttgcatccagg
gcaggaatgtaccgtttctgcccaacaccggattgccggtcgatctaccaggtggcagct
ccagatgcagaggccaaaccttttgtctgtggggcttgctatgtggagatctgcaccaag
tgccatcttgagtatcatcctttcatatcatgtgaggcatacaaagaatacaaggaagac
ccagacacgacactgcgtgaatggcgtaaagggaaggagaatgtgaagaactgcccttgc
tgtgggtacactatcgagaaagctgatggctgcaaccatgttgagtgcagatgtggcagc
catatttgctgggcatgcttggcgaacttcaggagcagcgaggagtgttatggccatcta
aggtctgtgcaccaatcctttgtggacattgtttag
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integrated database retrieval system
