Lolium perenne (perennial ryegrass): 127342514
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Entry
127342514 CDS
T08650
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127342514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127342514
03041 Spliceosome [BR:
lper03041
]
127342514
03009 Ribosome biogenesis [BR:
lper03009
]
127342514
03016 Transfer RNA biogenesis [BR:
lper03016
]
127342514
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127342514
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
127342514
Spliceosome [BR:
lper03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127342514
Complex C
U4/U6.U5 tri-SnRNP related factors
127342514
Ribosome biogenesis [BR:
lper03009
]
Eukaryotic type
Pre-60S particles
Helicases
127342514
Transfer RNA biogenesis [BR:
lper03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
127342514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
ArAE_1_C
nSTAND3
DUF3740
ATPase_2
Motif
Other DBs
NCBI-GeneID:
127342514
NCBI-ProteinID:
XP_051224437
LinkDB
All DBs
Position
3:complement(135537102..135544452)
Genome browser
AA seq
1006 aa
AA seq
DB search
MEEVENSSKRKSAELDSQDNSTAAVPDGQQQPPQPGSAAKRPNLARSCIHEVAVPNGYDL
AKDEAVNGTLSNPVFNGEMAKTYPFQLDPFQSVSIACLERNESILVSAHTSAGKTAIAEY
AIAMSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILR
AMLYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFA
EWICNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFVKQ
PSQPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAM
SMSKLDFNTEEEKDNIDQVFRSAILCLSEEDRGLPAIELMLPLLKRGIAVHHSGLLPIIK
ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIGSGEYIQMSGRA
GRRGKDERGICVIMIDEKMEMSVIKDMVLGKPAPLISTFRLSYYTILNLLSRAEGQFTAE
HVIRNSFHQFQYEKALPEVVQKITRLENEASLLDSSGENDLAEYHKLVLDISELEKKIMS
EMIRPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPAASTTLPPALSASRGNNYIVD
TLLHCSSSSNENGSRSKPCPPRAGEKGEMHVVPVPLPLVSGLSSVRINIPSDLRPPEARQ
NILSAVQELGKRYPQGLPKLHPITDMGIEEPDLVDVVHKLEVLEQKLDSHPLHKSDQSDQ
QLSWYQKKAELNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKMLGHIDADGVLQLKGRAA
CLIDTGDELLITELMFNGTFNDLDHHQVASVVSCFVPCEKSSEQIRLRNELSKPMTQLQE
AARKIAEVQRECKLDVNVEEYVESTCKPYLMDVIYSWSKGSTFGEVIEMTDIFEGSIIRL
VRRLDEFLNQLKAAAEAVGEVNLENKFGLASESLRRGIMFANSLYL
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggtggagaatagcagcaagaggaaatcagccgagctggattcacaagacaat
tccactgctgctgttccggatgggcagcagcagccgccccagcctggctcggctgccaag
cgtccgaacctcgcccggtcgtgcatccatgaagtcgccgtcccgaacggctacgacttg
gccaaggacgaggctgtaaatgggaccctttcaaatcccgtgtttaacggggagatggcc
aagacatacccgtttcagctcgaccccttccagagcgtctccatcgcgtgcttggagcgc
aacgagtcaatcttggtctcggctcacacctctgcggggaaaacagccattgctgagtac
gcgattgcaatgtccttcagagacaagcagagggtcatatacacctctccgctgaaggcc
ctcagcaatcagaagtacagggagcttagtcaggagttttccgatgttgggttgatgact
ggtgatgtcacgcttcagccaaatgccacttgcctggtcatgaccacggaaatcctcagg
gccatgctttataggggctccgaggtgatcaaggaggttggttgggttatatttgatgag
atccactacatgaaggatcgtgagagaggcgttgtgtgggaagagagtattgtcttcctc
ccccctgccatcaagatggtcttcctgtctgctaccatgtccaatgcaaccgagtttgct
gagtggatatgcaacctgcacaagcagccttgtcacgtggtgtacacagacttcaggccc
acaccgttacagcactatgtcttcccaataggtgggtctggtctctacctcgtagtggat
gaaaatggtcagttcagggaggataattttctaaagcttcaagacacatttgtaaagcaa
cctagtcaaccagatgggaggaagggtggtggacctaaagccagtggtcgaatagcaaaa
ggcggaaatgcttctggaacttctgacatatacagaattgtcaagatgattatggagcgc
aagtttcaaccagtcataattttcagctttagcagaagagaatgtgagcaccatgcgatg
tcaatgtcaaaacttgatttcaacactgaagaagaaaaggataacattgatcaggttttc
cgtagtgctattctctgtttgagcgaggaagatagaggtttacctgctatagagttgatg
ttgcctcttcttaaacgaggtattgcagtacaccattctgggctgcttccaataattaag
gagctggttgaattgctcttccaagaaggtcttgtgaaagctctctttgctactgagacg
tttgccatggggctgaacatgcctgcaaaaacagttgtcttcacatctgtcaaaaaatgg
gatggtgatagtaaccgttatattggttctggagaatatatacagatgagtggaagagct
ggtcgccgtggcaaggatgaacgtggcatttgtgttataatgatagatgagaagatggaa
atgagtgttatcaaggacatggtgttaggtaaaccagcacctctcatcagtactttccga
ctgagctactacactattctgaatttactgagtcgtgctgagggccaatttactgctgaa
catgtcatccggaattctttccaccagtttcagtatgaaaaggcattacctgaagtggtt
caaaagattacaaggttggaaaatgaagctagcctgctggactcctctggagagaatgat
cttgctgaatatcacaaattagtgcttgatatatctgaacttgagaagaaaatcatgtct
gagatgataagaccagaaagagctttgttatatttggttcctggaaggctggttaaggtg
agggatggttcaacagattggggatggggtgttgttgtaaatgttgtgaagaaacctgca
gcatctactactctcccccctgcattaagtgcatctcgtggtaataactatatagtggat
accttgcttcattgttcttctagttcgaatgagaatggatcacgttcaaagccatgccca
cctcgcgctggggagaagggagagatgcatgtggtgcctgtaccattacctttagtatct
ggtctaagcagcgttagaatcaacattccatctgatctacgaccacctgaagcaagacaa
aacatactttctgcagttcaagaactaggaaagcgttacccccaagggcttccaaagcta
catccaattacggacatgggtattgaagaacctgatttagttgacgtggttcataaactt
gaggttctcgagcagaaactagattctcacccactacataagtctgatcaaagtgaccag
caactgtcatggtaccaaaaaaaagctgaactgaatcatgaaattcaacaactaaagtca
aagatgcgggattcacagctacaaaaatttagagatgaactaaagaaccggtctcgcgtt
ctgaaaatgctgggtcacattgatgcggatggtgttctccagttaaagggacgtgctgcc
tgcttaattgacactggggatgagctgcttatcactgaacttatgtttaatggtacattt
aatgacctggatcatcatcaagttgcttccgtggttagctgttttgtaccgtgtgagaag
tctagtgagcaaatacgcctgagaaatgagctttctaagccaatgacgcaactccaagag
gctgcaagaaaaatagctgaggtacaacgggaatgcaaattggatgtaaatgtggaggaa
tacgttgaatcaacttgtaaaccctacctgatggatgtcatatactcctggtcaaagggc
tccacctttggagaggtcatagaaatgaccgacatttttgaaggaagcatcatacggcta
gttaggaggttggatgaatttctgaatcagctaaaagctgctgctgaagctgttggggag
gtgaaccttgagaacaagttcggattggcaagcgagagcctacgccggggtatcatgttt
gccaactcgttgtatctgtga
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