Lolium perenne (perennial ryegrass): 127343450
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Entry
127343450 CDS
T08650
Name
(RefSeq) uncharacterized protein isoform X1
KO
K06100
symplekin
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127343450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lper03021
]
127343450
03019 Messenger RNA biogenesis [BR:
lper03019
]
127343450
Transcription machinery [BR:
lper03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127343450
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
127343450
U7-dependent histone pre-mRNA processing factors
127343450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
127343450
NCBI-ProteinID:
XP_051225545
LinkDB
All DBs
Position
3:complement(221693169..221711571)
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AA seq
1282 aa
AA seq
DB search
MEFQADGARWPEPRGGSAEAPPPPLEAPSPRFDSSRALRLLRELGRNVTEDLVVLMPNLL
SFLKHDDPAVVKQSIASGTNLFAAVLEEMALQINGRGRVDAWLEEMWAWMNQFKDAVCVM
MHEPGPIAFKLLAVKFIETWILCLTPQPNSDRIQPIEGNNRRFDPSRLAKFHTSLDPVIL
EANANRAFILLVDILKSAYAHRGSFLVGTINSLAAIGKNRPVYYDRVLSVLFGFDPSLQT
SKGAHSASLRYSLKTAFLGFLRSPCQEMLDSKDILVRRLRALSPGEATEQIIRQVEKLSR
NIERASRMNKDEPPPWEMPYGDVSRKNPAPAMAEGIAKRARFDGSACLNPLIQGTPDYSD
VKIENDANMGHSSDPTILSTDVSPVEKMIEMIGALLAEGERGAESLGILISSVESDVMAD
IVIETMKHLPEVPFPLATNKSEPQSNLQSSSSPPTENFPGHTHSLPFTAQLAPSADGVGI
SPPDALLGPGSTDSKRDPRRDPRRLDPRRTVAPATASAIQVKVETTSMHQTNTLSDIPSV
PGKGEKCAEYSGDPPKSEDEEHPSSHPNNQVIVEENSEFLDDAIEPETIFELHAPVEAGF
PSDVNDEMDNPLSPEAISNNESDSMDLEVDPFSPVPKTSTPEDTTHELPLLPSHLDLSDS
EKITLHILAVRRIIDDYKKNSLDTRFSLLAHLVAQSTADDNIMDLIQRHIIFHYHDQKGH
ELAMHVLYQLQCVNIADAPESSTSTSEHYEKFFISLAKSLIDSLPASDKSFSKLLCDAPC
LPEPLFRLLEGLCMSQGNNQQIKDSEGDRVAQGLGTVWSLILVRPPLRQACLDIVLKCAI
HSQDEVRGKAVRLVVKKLCDLTYASEKVEQFATDSLLAIANKHGGETDANFTTSKESTAE
QVEVGIQETSVSGSQVPDAGPSESGSTKASLISPKQSAVSEAKRYTSLFFALCTKRPILL
RQLFNVYGGSPKVVKQCIHWHIPTLVRNLGSSCPEMLDIIHNPPEGSEELVSLILQTLTE
ESNPSPNLVVAVKHLYETKLKDASILIPLLSSFPKEEVLPIFPRLVDLPPARFQDALARI
LQGSAHTGPALTPAEALIAIHEINPEKDKVPLKKVIDACTACFEQRTVFTQQVLEKSLNK
LVDNVPIPLLFMRTLIQALDAFPALVDFVMGILSRLVNKQIWKMPKLWVGFLKLAYQTQP
RSFDVLLQLPTPQLEIALNKYPNLRPHLSSFVNQRNLHNILPRHTLNVLGFINEPQQAPM
PFAPAAMQTADTTSSLPGTTLM
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atggaattccaggcggacggcgcccggtggccggagccgcgaggcggctccgccgaggcg
ccgccgccgccgctggaggccccctctcctcgcttcgattcgtcgcgtgccctaagattg
ctgagagagcttggcagaaatgtaacagaagatttggttgtgctgatgccaaacttgctg
tcatttttgaaacacgacgatcctgcagttgttaagcaatccatagctagtgggacaaat
ttatttgctgctgtactggaagagatggcacttcagattaacgggcgtggaagagttgat
gcttggcttgaagagatgtgggcttggatgaaccagttcaaggatgcagtatgtgttatg
atgcatgagcctggtcctattgcatttaaactactcgccgtaaagttcattgaaacatgg
atattgtgcctcacacctcaacccaacagtgaccgaatacagccaattgaaggaaacaac
cggaggtttgatccgtcacgattagctaaatttcatactagccttgatcccgttattctg
gaagccaatgcaaatagggctttcatcctccttgtggatattttgaaatcagcgtatgct
catcgaggatccttcctagttggcaccattaattctcttgcagctattggaaagaatagg
ccggtttattatgaccgtgttctgtcagtgttgtttgggtttgaccctagtttgcagact
tcaaaaggagctcattctgcaagcctgagatattccctgaaaacagcctttttagggttt
ctacggagtccttgccaagaaatgcttgattccaaggacatactagtaaggcggctccga
gctctcagcccaggtgaagcaacagaacagattattaggcaggtagagaagctgtctaga
aatatagagcgggcttctcgtatgaacaaggatgaacctccaccatgggagatgccttac
ggagatgttagtcgaaagaatcctgctcctgctatggccgagggaatagctaagagagca
agatttgatggctctgcatgtttgaatccgctaatccagggaacacctgattattcagat
gtgaagattgaaaatgatgcaaatatgggtcattcctctgaccctactatcttgagtact
gatgtatctcctgttgagaagatgattgaaatgataggcgctttacttgctgaaggggaa
agaggagctgaatcccttggtattctcatctcatcggtagagtcagacgtcatggctgac
attgtaattgaaacaatgaagcatctaccagaagtaccatttccattagctacaaataag
agtgaaccgcaatcaaatttgcaatcttcctccagcccccctacagagaactttccaggc
catacacactctttgccctttacagcacaattagcaccatctgcagatggagtaggcatt
tcaccacctgatgcccttctcggtcctggttctactgattcgaagcgtgacccaagaaga
gatcctcgtcgccttgatccacggcgaacagttgcacctgctactgctagtgccatacag
gtgaaggtggaaaccactagcatgcatcagacaaatactttgtcagatataccttctgtt
cctgggaagggtgaaaaatgtgcagaatattcaggagacccacctaaaagtgaagatgag
gagcatccatcttctcatcctaataatcaagtaattgtcgaagagaactctgagtttttg
gatgatgccatagaaccagagacaatttttgaattgcacgcaccagtggaagccggattt
ccttctgatgtcaatgacgagatggacaatccattgtcaccagaagctatttcaaacaat
gaatctgatagtatggatttggaggttgatcccttttcaccagtccccaagacatcaaca
ccagaggatactactcatgagttgccacttcttccatctcatttggatttgagtgacagt
gagaagatcacattgcatatattagctgttaggcggataattgatgattacaagaaaaat
agcctggatacaagattttctttgcttgctcatttggttgctcagagtactgctgatgat
aatatcatggatttgattcagaggcacattatcttccattatcatgaccagaagggtcac
gaactggctatgcatgtgttgtatcagctgcagtgtgtcaatattgccgacgcaccagaa
agttccacatctacttctgaacattacgagaagttctttatatcacttgcaaagtccttg
attgattcgttacccgcctcagataaatcttttagtaaacttctgtgtgatgccccatgt
ttgcctgagcctctgtttagattacttgagggtctttgtatgtcacaaggcaacaaccaa
caaataaaggacagcgagggtgaccgtgttgcccaaggcctcggaacagtatggagtctt
attttagtgcggcctccacttcgtcaagcttgcttggatattgttctgaagtgtgccatt
cactctcaagatgaagtccgaggaaaagcggttagattggttgtgaaaaagctctgtgat
ctgacatatgcatcagaaaaagtcgagcagtttgccacagatagtcttctggcaattgct
aataagcatggcggggagacagatgctaatttcacaacctcaaaagaatctacagccgag
caggttgaagtaggcatccaggaaacttcagttagtggctcccaggttcccgatgctgga
ccttctgaaagtggatctaccaaggcctcgttgatttcacctaaacaatcagcagtatct
gaggccaaacgctatacttcattgttttttgcactttgcacaaagagacccattcttctt
cgacagttgttcaatgtctatggagggtctccaaaagttgtcaaacagtgtatccattgg
catatacccacccttgtaagaaatctgggatcctcatgtcctgaaatgctggacattatt
cataatccacctgaaggcagtgaagaacttgttagcctgatacttcaaacactgacggaa
gaatcaaatccttcacccaacctggttgtggctgttaaacatctgtatgagaccaagctg
aaggatgcatctattctcattccattgctatcctcatttccgaaggaagaggtgctaccc
atatttcctagactagttgatctcccacctgccagattccaagatgcacttgctcggata
ttgcagggatctgctcatactggtccagcgttaacccctgccgaagctctgattgcaatc
catgaaattaatccagaaaaggacaaagttcccctaaagaaggtcatagatgcttgcact
gcttgctttgagcagcgcacggtatttactcagcaagttctggagaagtcattgaataaa
ttggttgataatgttccgattcctcttctttttatgaggactcttattcaagcacttgat
gctttcccagctttggttgattttgtcatgggaatactttccaggcttgtcaataagcag
atctggaaaatgccaaagctgtgggttggattcttaaaattggcataccagactcaacca
cgctcgtttgatgttttgttacagttacctacgccgcagcttgaaattgcactgaataag
tatccgaatcttcgaccacatctttcttccttcgttaatcagcggaacttgcacaacatc
ttgcccagacatactttgaatgtcttgggattcatcaatgaaccacagcaggcaccaatg
ccatttgcacctgctgcgatgcaaacagcagacacaacttcctctcttcctggtacaaca
ctaatgtga
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